Computational Genomics
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PRROMenade
PRROMenade PublicPRROMenade is a highly scalable sequence classifier that allows for both taxonomic and functional classification of metagenomic reads.
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- SimRA Public
SimRA (Simulation based on Random-graphs Algorithms) is a framework for simulating generic and complex evolutionary scenarios of multiple populations with subdivision and admixture. The algorithm generates a network structure, called Ancestral Recombination Graph (ARG), that models coalescence and genetic exchange events (recombinations) with SN…
ComputationalGenomics/SimRA’s past year of commit activity - Reveal Public
ReVeaL, Rare Variant Learning, is a stochastic regularization-based learning algorithm.
ComputationalGenomics/Reveal’s past year of commit activity - PRROMenade Public
PRROMenade is a highly scalable sequence classifier that allows for both taxonomic and functional classification of metagenomic reads.
ComputationalGenomics/PRROMenade’s past year of commit activity - LSM Public
The Lesion Shedding Model (LSM) reconstructs the relative ctDNA contributions from multiple tumors within a patient into the blood.
ComputationalGenomics/LSM’s past year of commit activity - Concerti Public
Concerti is an algorithm for inferring disease evolution phylogenies, at genomic scales, from multiple sites and multiple longitudinal DNA sequencing samples.
ComputationalGenomics/Concerti’s past year of commit activity
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