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CooperstoneLab

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  1. apple apple Public

    Code pertinent to processing untargeted metabolomics data and integrating with SNP array data to see significant associations and visualize results.

    Rich Text Format

  2. MS2extract MS2extract Public

    R package to create in-house MS/MS compound libraries

    R 5

  3. tomato-pig-microbiome tomato-pig-microbiome Public

    Whole genome sequencing analysis of gut microbiome of pigs consuming control or tomato containing diets.

    HTML 1

  4. tomato-liver-omics tomato-liver-omics Public

    Untargeted metabolomics code for analysis from Dzakovich et al. of livers of mice fed control, red, or tangerine tomato containing diets.

    HTML 1

  5. carotenoid-analysis carotenoid-analysis Public

    Tools to aid in carotenoid analysis

  6. metabolomics-tools metabolomics-tools Public

    A compilation of code helpful in filtering, assessing data quality, and conducting first pass metabolomics analysis.

    HTML 1 1

Repositories

Showing 10 of 14 repositories
  • ohio-apples Public

    A website to share the results of a set of Ohio State University apple sensory studies.

    CooperstoneLab/ohio-apples’s past year of commit activity
    JavaScript 0 0 0 0 Updated Feb 3, 2025
  • cooperstonelab.github.io Public

    The source repo for the Cooperstone lab website.

    CooperstoneLab/cooperstonelab.github.io’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jan 29, 2025
  • metabolomics--blended-juice--MEF--SS Public

    Evaluation of the impact of moderate electric field (MEF) and shear stress (SS) on the chemical profile of a blended fruit and vegetable juice using untargeted metabolomics.

    CooperstoneLab/metabolomics--blended-juice--MEF--SS’s past year of commit activity
    0 0 0 0 Updated Dec 16, 2024
  • PhenolicsDB Public

    PhenolicsDB: phenolics MS/MS (LC-ESI-QTOF) database repository

    CooperstoneLab/PhenolicsDB’s past year of commit activity
    R 1 CC-BY-4.0 0 0 0 Updated Oct 23, 2024
  • MS2extract Public

    R package to create in-house MS/MS compound libraries

    CooperstoneLab/MS2extract’s past year of commit activity
    R 5 0 0 0 Updated Oct 23, 2024
  • apple_phytochemicals Public

    This repository host the document to explore apple phytochemicals detected by untargeted metabolomics

    CooperstoneLab/apple_phytochemicals’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 10, 2024
  • ufrgs-metab Public

    Source material for a short course on metabolomics taught by Jessica Cooperstone in May 2024 at UFRGS, Brazil

    CooperstoneLab/ufrgs-metab’s past year of commit activity
    HTML 1 0 0 0 Updated Jun 20, 2024
  • tomato-pig-microbiome Public

    Whole genome sequencing analysis of gut microbiome of pigs consuming control or tomato containing diets.

    CooperstoneLab/tomato-pig-microbiome’s past year of commit activity
    HTML 0 1 0 0 Updated Sep 5, 2023
  • TomatoSoy-Obesity-Metabolomics Public
    CooperstoneLab/TomatoSoy-Obesity-Metabolomics’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 20, 2023
  • metabolomics-tools Public

    A compilation of code helpful in filtering, assessing data quality, and conducting first pass metabolomics analysis.

    CooperstoneLab/metabolomics-tools’s past year of commit activity
    HTML 1 1 0 0 Updated Jun 26, 2023
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