Skip to content

Releases: Crop-Phenomics-Group/SeedGerm

Publication Release

30 Nov 22:30
@JoshuaColmer JoshuaColmer
v0.1.1
25aa065
Compare
Choose a tag to compare
Publication Release Latest
Latest

SeedGerm

Joshua Colmer1, Aaron Bostrom1, Joshua Ball 1, Daniel Reynolds1, Ji Zhou1,2,3*

1Earlham Institute, Norwich Research Park, Norwich UK
2University of East Anglia, Norwich Research Park, Norwich UK
3Plant Phenomics Research Center, UK-China Plant Phenomics Centre, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, China

*Correspondence: ji.zhou@uea.ac.uk, Ji.Zhou@njau.edu.cn

Install Python, Anaconda and Libraries

If you wish to run SeedGerm from the source code, you will need to set up Python on your system.

  1. Install Python releases:

    • Read the beginner’s guide to Python if you are new to the language:
    https://wiki.python.org/moin/BeginnersGuide

    • For Windows users, Python 3 release can be downloaded via:
    https://www.python.org/downloads/windows/

    • For Mac OS users, Python 3 release can be downloaded via:
    https://www.python.org/downloads/mac-osx/

    • SeedGerm only supports Python 3

  2. Install Anaconda Python distribution:

    • Read the install instruction using the URL: https://docs.continuum.io/anaconda/install

    • For Windows users, a detailed step-by-step installation guide can be found via:
    https://docs.continuum.io/anaconda/install/windows

    • For Mac OS users, a detailed step-by-step installation guide can be found via:
    https://docs.continuum.io/anaconda/install/mac-os.html

    • An Anaconda Graphical installer can be found via:
    https://www.continuum.io/downloads

    • We recommend users install Anaconda Python 3.7

  3. Install packages:

    • SeedGerm uses a number of third-party libraries that you may need to add to your conda environment.
    These include, but are not limited to:

     scikit-image
 scikit-learn
 Keras

    To install these in your environment, check out: https://conda.io/docs/user-guide/tasks/manage-pkgs.html

Running SeedGerm

Please see the README.txt file that is included in this repository.

Alternatively to the source code, a stand-alone Windows .exe file for SeedGerm is available for download.

Assets 8
Loading