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1. chaitjo/geometric-gnn-dojo chaitjo/geometric-gnn-dojo Public

   Geometric GNN Dojo provides unified implementations and experiments to explore the design space of Geometric Graph Neural Networks.

   Jupyter Notebook 472 43

2. pymol-remote pymol-remote Public

   Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)

   Python 11

3. ai4er-cdt/geograph ai4er-cdt/geograph Public

   GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enab…

   Jupyter Notebook 39 10

4. hex_howl hex_howl Public

   Python 6 2

5. a-r-j/ProteinWorkshop a-r-j/ProteinWorkshop Public

   Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)

   Python 202 16

6. Hollfelder-Lab/lrDMS-IRED Hollfelder-Lab/lrDMS-IRED Public

   Code, data and notebooks for engineering enzymes with ultra-high throughput microfluidics. Please read our accompanying paper for details.

   Jupyter Notebook 6