Merge pull request #8 from DCAN-Labs/updatedJLFtemplates

updated JLF templates
DCAN-Labs · Jun 20, 2024 · a8bf506 · a8bf506
2 parents 5e0ddc3 + 581f89d
commit a8bf506
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diff --git a/.gitignore b/.gitignore
@@ -1,4 +1,4 @@
 PreFreeSurfer/IBIS_PreFreeSurferPipeline.sh
 Examples
 ICAFIX/README.md
-global/templates/*
+
diff --git a/global/templates/JLF_templates/Template01/Segmentation.nii.gz b/global/templates/JLF_templates/Template01/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template01/T1w_brain.nii.gz b/global/templates/JLF_templates/Template01/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template01/T2w_brain.nii.gz b/global/templates/JLF_templates/Template01/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template02/Segmentation.nii.gz b/global/templates/JLF_templates/Template02/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template02/T1w_brain.nii.gz b/global/templates/JLF_templates/Template02/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template02/T2w_brain.nii.gz b/global/templates/JLF_templates/Template02/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template03/Segmentation.nii.gz b/global/templates/JLF_templates/Template03/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template03/T1w_brain.nii.gz b/global/templates/JLF_templates/Template03/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template03/T2w_brain.nii.gz b/global/templates/JLF_templates/Template03/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template04/Segmentation.nii.gz b/global/templates/JLF_templates/Template04/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template04/T1w_brain.nii.gz b/global/templates/JLF_templates/Template04/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template04/T2w_brain.nii.gz b/global/templates/JLF_templates/Template04/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template05/Segmentation.nii.gz b/global/templates/JLF_templates/Template05/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template05/T1w_brain.nii.gz b/global/templates/JLF_templates/Template05/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template05/T2w_brain.nii.gz b/global/templates/JLF_templates/Template05/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template06/Segmentation.nii.gz b/global/templates/JLF_templates/Template06/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template06/T1w_brain.nii.gz b/global/templates/JLF_templates/Template06/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template06/T2w_brain.nii.gz b/global/templates/JLF_templates/Template06/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template07/Segmentation.nii.gz b/global/templates/JLF_templates/Template07/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template07/T1w_brain.nii.gz b/global/templates/JLF_templates/Template07/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template07/T2w_brain.nii.gz b/global/templates/JLF_templates/Template07/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template08/Segmentation.nii.gz b/global/templates/JLF_templates/Template08/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template08/T1w_brain.nii.gz b/global/templates/JLF_templates/Template08/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template08/T2w_brain.nii.gz b/global/templates/JLF_templates/Template08/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template09/Segmentation.nii.gz b/global/templates/JLF_templates/Template09/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template09/T1w_brain.nii.gz b/global/templates/JLF_templates/Template09/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template09/T2w_brain.nii.gz b/global/templates/JLF_templates/Template09/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template10/Segmentation.nii.gz b/global/templates/JLF_templates/Template10/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template10/T1w_brain.nii.gz b/global/templates/JLF_templates/Template10/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template10/T2w_brain.nii.gz b/global/templates/JLF_templates/Template10/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template11/Segmentation.nii.gz b/global/templates/JLF_templates/Template11/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template11/T1w_brain.nii.gz b/global/templates/JLF_templates/Template11/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template11/T2w_brain.nii.gz b/global/templates/JLF_templates/Template11/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template12/Segmentation.nii.gz b/global/templates/JLF_templates/Template12/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template12/T1w_brain.nii.gz b/global/templates/JLF_templates/Template12/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template12/T2w_brain.nii.gz b/global/templates/JLF_templates/Template12/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template13/Segmentation.nii.gz b/global/templates/JLF_templates/Template13/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template13/T1w_brain.nii.gz b/global/templates/JLF_templates/Template13/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template13/T2w_brain.nii.gz b/global/templates/JLF_templates/Template13/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template14/Segmentation.nii.gz b/global/templates/JLF_templates/Template14/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template14/T1w_brain.nii.gz b/global/templates/JLF_templates/Template14/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template14/T2w_brain.nii.gz b/global/templates/JLF_templates/Template14/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template15/Segmentation.nii.gz b/global/templates/JLF_templates/Template15/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template15/T1w_brain.nii.gz b/global/templates/JLF_templates/Template15/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template15/T2w_brain.nii.gz b/global/templates/JLF_templates/Template15/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template16/Segmentation.nii.gz b/global/templates/JLF_templates/Template16/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template16/T1w_brain.nii.gz b/global/templates/JLF_templates/Template16/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template16/T2w_brain.nii.gz b/global/templates/JLF_templates/Template16/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template17/Segmentation.nii.gz b/global/templates/JLF_templates/Template17/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template17/T1w_brain.nii.gz b/global/templates/JLF_templates/Template17/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template17/T2w_brain.nii.gz b/global/templates/JLF_templates/Template17/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template18/Segmentation.nii.gz b/global/templates/JLF_templates/Template18/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template18/T1w_brain.nii.gz b/global/templates/JLF_templates/Template18/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template18/T2w_brain.nii.gz b/global/templates/JLF_templates/Template18/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template19/Segmentation.nii.gz b/global/templates/JLF_templates/Template19/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template19/T1w_brain.nii.gz b/global/templates/JLF_templates/Template19/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template19/T2w_brain.nii.gz b/global/templates/JLF_templates/Template19/T2w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template20/Segmentation.nii.gz b/global/templates/JLF_templates/Template20/Segmentation.nii.gz
diff --git a/global/templates/JLF_templates/Template20/T1w_brain.nii.gz b/global/templates/JLF_templates/Template20/T1w_brain.nii.gz
diff --git a/global/templates/JLF_templates/Template20/T2w_brain.nii.gz b/global/templates/JLF_templates/Template20/T2w_brain.nii.gz