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DEpt-metagenom

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  1. MetagenoMongo MetagenoMongo Public

    Python 1 2

  2. intern_visualisation intern_visualisation Public

    Draw a bar graph plot to visualise availability of interns for each week during a time period

    Jupyter Notebook 1

  3. containerized_genomics_tools containerized_genomics_tools Public

    This repository hosts the files necessary to build and test containers for genomics tools

    HTML 1 3

  4. TFRE-in-UCP1-promoter TFRE-in-UCP1-promoter Public

    : Identification/prediction of regulator TFs in the promoter of the human and mouse UCP1 gene by in silico studies that possess a DNA-binding element and therefore potentially play a role in the di…

    C#

  5. QVG QVG Public

    Forked from laczkol/QVG

    Pipeline to reconstruct the targeted dominant consensus genome of viral samples and analyze their within-host variability.

    Shell

  6. Genome-error-simulations-supplementary Genome-error-simulations-supplementary Public

    Supplementary material to the paper titled "An overlooked phenomenon: complex interactions of potential error sources on the quality of bacterial *de novo* genome assemblies"

    R

Repositories

Showing 10 of 14 repositories
  • text_processing_msc Public

    Material for the Bioinformatics MSc text processing course

    DEpt-metagenom/text_processing_msc’s past year of commit activity
    Awk 0 1 5 0 Updated Dec 2, 2024
  • tfcollectv2.0 Public
    DEpt-metagenom/tfcollectv2.0’s past year of commit activity
    0 0 0 0 Updated Dec 2, 2024
  • QPPL Public

    Pipeline to assemble and characterize phages that were sequenced using long-read technology.

    DEpt-metagenom/QPPL’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Nov 27, 2024
  • containerized_genomics_tools Public

    This repository hosts the files necessary to build and test containers for genomics tools

    DEpt-metagenom/containerized_genomics_tools’s past year of commit activity
    HTML 1 3 3 1 Updated Nov 11, 2024
  • TraDb Public

    Screening tool and database of plasmid transfer genes

    DEpt-metagenom/TraDb’s past year of commit activity
    Python 0 LGPL-2.1 0 0 0 Updated Oct 21, 2024
  • jupyter-perl-docker Public

    Creating a Docker image containing a Perl 5 kernel for Jupyter

    DEpt-metagenom/jupyter-perl-docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 14, 2024
  • MetagenoMongo Public
    DEpt-metagenom/MetagenoMongo’s past year of commit activity
    Python 1 2 9 0 Updated Sep 20, 2024
  • swissmodel_automation Public

    This repository is for code that uses Swissmodel API for protein modelling

    DEpt-metagenom/swissmodel_automation’s past year of commit activity
    Python 0 0 0 0 Updated Jul 16, 2024
  • intern_visualisation Public

    Draw a bar graph plot to visualise availability of interns for each week during a time period

    DEpt-metagenom/intern_visualisation’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 9, 2024
  • TFRE-in-UCP1-promoter Public

    : Identification/prediction of regulator TFs in the promoter of the human and mouse UCP1 gene by in silico studies that possess a DNA-binding element and therefore potentially play a role in the direct regulation of the gene expression.

    DEpt-metagenom/TFRE-in-UCP1-promoter’s past year of commit activity
    C# 0 0 0 0 Updated Jan 29, 2024
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