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Updating the openmp deps detection #235

Updating the openmp deps detection

Updating the openmp deps detection #235

Workflow file for this run

name: Processing commands
on:
issue_comment:
types: [created]
permissions:
contents: read # to fetch code (actions/checkout)
jobs:
build:
permissions:
contents: read # to fetch code (actions/checkout)
pull-requests: write # to create comment
runs-on: ubuntu-latest
if: ${{ github.event.issue.pull_request }}
steps:
- uses: actions/github-script@v6
id: get_round
with:
result-encoding: string
script: |
const bodycmt = context.payload.comment.body
if(bodycmt.includes("/echo"))
return 'echo'
if(bodycmt.includes("/builddoc"))
return 'builddoc'
if(bodycmt.includes("/fullbuild"))
return 'fullbuild'
return 'stop'
- name: Emoji-comment
if: steps.get_round.outputs.result != 'stop'
uses: actions/github-script@v6
with:
github-token: ${{secrets.GITHUB_TOKEN}}
script: |
github.rest.reactions.createForIssueComment({
comment_id: ${{ github.event.comment.id }},
owner: context.repo.owner,
repo: context.repo.repo,
content: 'rocket'})
### Common
- uses: actions/github-script@v6
id: get_pr_number
with:
result-encoding: string
script: |
//get pullrequest url
const pr_number = context.payload.issue.number
return pr_number
######
# buildDoc COMMAND
- uses: actions/checkout@v3
name: "checkout branch"
if: steps.get_round.outputs.result == 'builddoc'
with:
repository: ${{ github.repository }}
ref: refs/pull/${{ steps.get_pr_number.outputs.result }}/merge
# token: ${{ secrets.PUSH_TO_DGTAL_GITHUB_IO_TOKEN }}
fetch-depth: 2
- name: install dependencies
if: steps.get_round.outputs.result == 'builddoc'
run: |
set -x
sudo apt-get update && sudo apt-get install -y graphviz ssh doxygen libboost-dev texlive-latex-base
git config --global user.email "dgtal@dgtal.org"
git config --global user.name "DGtal"
- name: configure all
if: steps.get_round.outputs.result == 'builddoc'
run: |
set -ex
mkdir -p build_doc && cd build_doc && cmake .. -DBUILD_EXAMPLES=true -DBUILD_TESTING=true
- name: build doc
id: build-and-check-doc
if: steps.get_round.outputs.result == 'builddoc'
run: |
cd build_doc
wget --no-check-certificate -O "${{runner.workspace}}/DGtal/build_doc/DGtalTools-tagfile" http://dgtal.org/doc/tags/DGtalTools-tagfile;
make -j 2 doc > buildDoc.log
export BUILD_DIR=${{runner.workspace}}/DGtal/build_doc
export SRC_DIR=${{runner.workspace}}/DGtal/
${{runner.workspace}}/DGtal/.github/workflows/checkDoxygenDocumentation.sh
if [ -s /tmp/doxygen.kept.log ]; then
echo "********************************************"
content=`cat /tmp/doxygen.kept.log`
echo $content
delimiter="$(openssl rand -hex 8)"
echo "DoxygenError<<${delimiter}" >> "${GITHUB_OUTPUT}"
cat /tmp/doxygen.kept.log >> "${GITHUB_OUTPUT}"
echo "${delimiter}" >> "${GITHUB_OUTPUT}"
exit 1
fi
- name: Preparing Deploy
if: steps.get_round.outputs.result == 'builddoc'
run: |
mkdir pr${{ steps.get_pr_number.outputs.result }}
mv ${{runner.workspace}}/DGtal/build_doc/html/* pr${{ steps.get_pr_number.outputs.result }}/
git clone --depth 2 https://github.com/DGtal-team/doc-pr.git
cd doc-pr
rm -rf pr${{ steps.get_pr_number.outputs.result }}
mv ../pr${{ steps.get_pr_number.outputs.result }} .
- name: Deploy to GitHub Pages
if: steps.get_round.outputs.result == 'builddoc'
uses: JamesIves/github-pages-deploy-action@v4.4.1
with:
token: ${{ secrets.DEPLOYACTION }}
repository-name: DGtal-team/doc-pr
folder: doc-pr
branch: main
single-commit: true
clean: true
- name: Post address
uses: actions/github-script@v6
if: ${{ steps.get_round.outputs.result == 'builddoc' && success() && steps.get_round.outputs.result != 'stop' }}
with:
script: |
const tmp_round = "${{ steps.get_round.outputs.result }}";
const id = tmp_round.indexOf(":");
const round = tmp_round.substring(0,id);
const address = "The documentation is built. It will be available, after a few minutes, here: https://dgtal-team.github.io/doc-pr/pr${{ steps.get_pr_number.outputs.result }}/index.html"
github.rest.issues.createComment({
owner: "DGtal-team",
repo: "DGtal",
issue_number: ${{ github.event.issue.number }},
body: address
});
github.rest.reactions.createForIssueComment({
comment_id: ${{ github.event.comment.id }},
owner: context.repo.owner,
repo: context.repo.repo,
content: 'hooray'})
- name: Post error
env:
ERRORMSG: ${{steps.build-and-check-doc.outputs.DoxygenError}}
uses: actions/github-script@v6
if: ${{ failure() && steps.get_round.outputs.result == 'builddoc' }}
with:
script: |
const error = process.env.ERRORMSG
const msg = "There was an error while building the doc. Check the GitHub actions for debugging.\n"+error
github.rest.issues.createComment({
owner: "DGtal-team",
repo: "DGtal",
issue_number: ${{ github.event.issue.number }},
body: msg
});
# ECHO COMMAND
- name: Echo action
uses: actions/github-script@v6
if: steps.get_round.outputs.result == 'echo'
with:
github-token: ${{secrets.GITHUB_TOKEN}}
script: |
const bodycmt = context.payload.comment.body
github.rest.issues.createComment({
issue_number: context.issue.number,
owner: context.repo.owner,
repo: context.repo.repo,
body: bodycmt
})
###########
# fullbuild COMMAND
- name: install dependencies
if: steps.get_round.outputs.result == 'fullbuild'
run: |
set -x
sudo apt-get update && sudo apt-get install -y libqglviewer-dev-qt5 libboost-dev ninja-build libhdf5-serial-dev libboost-dev libcairo2-dev libgmp-dev libfftw3-dev libinsighttoolkit4-dev
git config --global user.email "dgtal@dgtal.org"
git config --global user.name "DGtal"
- uses: actions/checkout@v3
name: "checkout branch"
if: steps.get_round.outputs.result == 'fullbuild'
with:
repository: ${{ github.repository }}
ref: refs/pull/${{ steps.get_pr_number.outputs.result }}/merge
fetch-depth: 2
- name: Emoji-comment
if: steps.get_round.outputs.result != 'stop'
uses: actions/github-script@v6
with:
github-token: ${{secrets.GITHUB_TOKEN}}
script: |
github.rest.reactions.createForIssueComment({
comment_id: ${{ github.event.comment.id }},
owner: context.repo.owner,
repo: context.repo.repo,
content: 'rocket'})
- name: configure/build/test fullbuild
if: steps.get_round.outputs.result == 'fullbuild'
run: |
cmake -E make_directory ${{runner.workspace}}/build
cmake -S ${{runner.workspace}}/DGtal -B ${{runner.workspace}}/build -DBUILD_EXAMPLES=true -DBUILD_TESTING=true -DDGTAL_RANDOMIZED_TESTING_THRESHOLD=100 -DWITH_OPENMP=true -DWITH_GMP=true -DWITH_FFTW3=true -DWARNING_AS_ERROR=ON -DWITH_HDF5=true -DWITH_QGLVIEWER=true -DWITH_CAIRO=true -DWITH_EIGEN=true -DWITH_ITK=true -DDGTAL_ENABLE_FLOATING_POINT_EXCEPTIONS=true -G Ninja
cd ${{runner.workspace}}/build
cmake --build .
export TESTBLACKLIST="(testLinearStructure)"
ctest -E $TESTBLACKLIST
###########