linux tests and documentation builds for 'kiara_plugin.topic_modelling'

test: add bigram step in pipeline #71

Workflow file for this run

.github/workflows/build-linux.yaml at ff5eaa1

	name: "linux tests and documentation builds for 'kiara_plugin.topic_modelling'"
	# This workflow is triggered on pushes to the repository.
	on: [push]

	jobs:

	# commitlint:
	# name: lint commit message
	# runs-on: ubuntu-latest
	# steps:
	# - uses: actions/checkout@v2
	# with:
	# fetch-depth: 0
	# - uses: wagoid/commitlint-github-action@v4

	test-linux:
	name: pytest on linux
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python_version: ["3.8", "3.9", "3.10", "3.11","3.12"]
	steps:
	- name: "Set up Python ${{ matrix.python_version }}"
	uses: actions/setup-python@v4
	with:
	python-version: "${{ matrix.python_version }}"
	- name: pip cache
	id: pip-cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ matrix.python_version }}
	- uses: actions/checkout@v4
	- name: install kiara_plugin.topic_modelling
	run: pip install -U .[dev_testing]
	- name: display installed kiara and module package versions
	run: pip list \| grep kiara
	- name: test with pytest
	run: pytest --cov-report=xml --cov=kiara_plugin.topic_modelling tests
	- name: Coveralls
	uses: coverallsapp/github-action@v2
	with:
	parallel: true
	flag-name: run ${{ join(matrix.*, ' - ') }}
	format: cobertura
	file: coverage.xml

	# Uncomment this if you have coveralls.io setup with this repo
	coverage:
	name: test coverage
	runs-on: ubuntu-latest
	needs:
	- test-linux
	steps:
	- name: Coveralls Finished
	uses: coverallsapp/github-action@v2
	with:
	parallel-finished: true


	# Uncomment this if you want to run mypy
	mypy-linux:
	name: mypy check on linux
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python_version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
	steps:
	- name: "Set up Python ${{ matrix.python_version }}"
	uses: actions/setup-python@v5
	with:
	python-version: "${{ matrix.python_version }}"
	- name: pip cache
	id: pip-cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: $${{ runner.os }}-pip-${{ matrix.python_version }}
	- uses: actions/checkout@v4
	- name: install kiara_plugin.topic_modelling
	run: pip install -U .[dev_testing]
	- name: Test with mypy
	run: make mypy

	linting-linux:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Install Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: pip cache
	id: pip-cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-3.12
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -U ruff
	# Include `--format=github` to enable automatic inline annotations.
	- name: Run Ruff
	run: ruff check --output-format=github src/

	build_python_package:
	name: build python package
	runs-on: ubuntu-latest
	steps:
	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"
	- name: pip cache
	id: pip-cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-3.12
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: install pip
	run: pip install -U pip setuptools setuptools_scm build
	- name: create packages
	run: python -m build
	- name: upload artifacts
	uses: actions/upload-artifact@v3
	with:
	name: build-dists
	path: dist/

	release_python_package:
	name: publish python package to pypi
	if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
	runs-on: ubuntu-latest
	needs:
	- test-linux
	- mypy-linux
	- linting-linux
	- build_python_package
	- build_conda_package
	permissions:
	id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
	steps:
	- name: Retrieve build distributions
	uses: actions/download-artifact@v3
	with:
	name: build-dists
	path: dist/
	- name: publish to PyPI # make sure you have pypi trusted publishing configured for this repo
	uses: pypa/gh-action-pypi-publish@release/v1

	build_conda_package:
	name: conda package build (and upload if release)
	runs-on: ubuntu-latest
	steps:
	- name: "Set up Python 3.12"
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: pip cache
	id: pip-cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-3.12
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: install kiara_plugin.develop
	run: pip install kiara_plugin.develop
	- name: build conda package
	run: kiara build conda pkg --channel dharpa --channel conda-forge --patch-data ci/conda/conda-pkg-patch.yaml --output-folder build-dir .
	- name: upload artifacts
	uses: actions/upload-artifact@v4
	with:
	name: conda-pkgs
	path: build-dir/

	release_conda_package:
	name: publish python package to anaconda
	if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
	runs-on: ubuntu-latest
	needs:
	- test-linux
	- mypy-linux
	- linting-linux
	- build_python_package
	- build_conda_package
	steps:
	- name: "Set up Python 3.12"
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	- name: pip cache
	id: pip-cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-3.12
	- name: install kiara_plugin.develop
	run: pip install kiara_plugin.develop
	- name: Retrieve build distributions
	uses: actions/download-artifact@v4
	with:
	name: conda-pkgs
	path: build-dir/
	- name: release conda package
	run: kiara build conda publish --user dharpa --channel dharpa --token ${{ secrets.ANACONDA_PUSH_TOKEN }} build-dir

	merge_tag_to_main:
	name: merge current tag to main branch
	runs-on: ubuntu-latest
	if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
	needs:
	- release_python_package
	- release_conda_package
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- run: git config --global user.email "markus@frkl.io"
	- run: git config --global user.name "Markus Binsteiner"
	- name: extract tag name
	run: echo "RELEASE_VERSION=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV
	- name: checkout main branch
	run: git checkout main
	- name: merge tag
	run: git merge "${RELEASE_VERSION}"
	- name: push updated main branch
	run: git push https://${{ secrets.GITHUB_TOKEN }}@github.com/DHARPA-Project/kiara_plugin.topic_modelling.git

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test: add bigram step in pipeline #71

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test: add bigram step in pipeline #71

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