First version (#1)

* First commit

Update with version and git hash

Add an algorithm job benchmark

Switch reader study and add a navigate to next case metric

Fallback to staging url if create url is not provided

Do not correct second case navigation for initial page loading

Add an n=30 baseline

Add evaluation

Add checks for missing history and/or values when evaluating

More datapoints

Hookup evaluation and add some printing to stdout

* Add CI

* Add readme.md

* Update reporting and use SEM instead of SD

* Fist test

* Fix format CI workflow

.github/workflows/ci.yml

@@ -0,0 +1,49 @@
+name: CI
+
+on:
+  push:
+  pull_request:
+  release:
+    types:
+      - published
+
+env:
+  MINIMUM_PYTHON_VERSION: '3.10'
+
+jobs:
+  precommit:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Install Python ${{ env.MINIMUM_PYTHON_VERSION }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ env.MINIMUM_PYTHON_VERSION }}
+      - uses: actions/checkout@v3
+      - name: Install pre-commit
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install pre-commit virtualenv!=20.0.6
+          pre-commit install
+      - name: Run static code inspections
+        run: pre-commit run --all-files
+
+
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.11", "3.12"]
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install poetry
+      - name: Test with Poetry
+        run: |
+          poetry install -v
+          poetry run pytest -v

.gitignore

@@ -0,0 +1,133 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+env
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# Pycharm
+.idea/

.pre-commit-config.yaml

@@ -0,0 +1,29 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.5.0
+    hooks:
+      - id: check-docstring-first
+      - id: debug-statements
+      - id: end-of-file-fixer
+      - id: mixed-line-ending
+      - id: trailing-whitespace
+  - repo: https://github.com/pycqa/isort
+    rev: 5.12.0
+    hooks:
+      - id: isort
+  - repo: https://github.com/ambv/black
+    rev: 23.9.1
+    hooks:
+      - id: black
+        language: python
+  - repo: https://github.com/PyCQA/flake8
+    rev: 6.1.0
+    hooks:
+      - id: flake8
+        language: python
+        additional_dependencies:
+          - flake8-bugbear
+          - pep8-naming
+          - flake8-docstrings
+          - mccabe
+          - yesqa