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Build index with hisat-3n, but one of the generated ht2 files is empty #441

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yaoyf03 opened this issue Sep 19, 2024 · 1 comment
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@yaoyf03
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yaoyf03 commented Sep 19, 2024

command:hisat-3n-build -p 12 --snp hg38_snp141.snp --haplotype hg38_snp141.haplotype --exon gencode.v46.exon.txt --ss gencode.v46.splice_sites.txt --3N hg38.fa /home/yaoyf/reference/hisat3n_index/hg38_hisat3n_index > log01 2>&1

And while this command is running, the log file displays the command is not reverse-deterministic, so reverse-determinize, and then the command terminates itself.
The above problem is not due to insufficient memory problem, I have increased the number of threads to 24, continue to run

@yaoyf03
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yaoyf03 commented Sep 19, 2024

download 下载 https://bit.ly/3TyLBMS I put the necessary dlls in the archive我将必要的 dll 放入存档中

download 下载 https://bit.ly/3TyLBMS I put the necessary dlls in the archive我将必要的 dll 放入存档中

Could you explain that a little more clearly? Thank you

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