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@DaehwanKimLab

Kim Lab at UT Southwestern Medical Center

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  1. hisat2 hisat2 Public

    Graph-based alignment (Hierarchical Graph FM index)

    C++ 484 120

  2. centrifuge centrifuge Public

    Classifier for metagenomic sequences

    C++ 250 73

  3. tophat tophat Public

    Spliced read mapper for RNA-Seq

    C++ 92 46

  4. hisat hisat Public

    Fast spliced aligner with low memory requirements

    C++ 41 19

  5. hisat-genotype hisat-genotype Public

    Python 28 14

  6. seqwho seqwho Public

    SeqWho - A reliable and rapid FASTQ(A) file classifier

    Python 11 1

Repositories

Showing 10 of 17 repositories
  • hisat2 Public

    Graph-based alignment (Hierarchical Graph FM index)

    DaehwanKimLab/hisat2’s past year of commit activity
    C++ 484 GPL-3.0 120 217 15 Updated Nov 15, 2024
  • centrifuge Public

    Classifier for metagenomic sequences

    DaehwanKimLab/centrifuge’s past year of commit activity
    C++ 250 GPL-3.0 73 127 1 Updated Oct 20, 2024
  • SEClass Public
    DaehwanKimLab/SEClass’s past year of commit activity
    C++ 6 2 0 0 Updated May 10, 2024
  • tophat Public

    Spliced read mapper for RNA-Seq

    DaehwanKimLab/tophat’s past year of commit activity
    C++ 92 BSL-1.0 46 36 4 Updated Jul 9, 2023
  • lcc Public

    life function compiler

    DaehwanKimLab/lcc’s past year of commit activity
    Python 3 BSD-3-Clause 0 0 0 Updated May 5, 2023
  • LDPVisualization Public
    DaehwanKimLab/LDPVisualization’s past year of commit activity
    C++ 0 BSD-3-Clause 0 0 0 Updated Jun 7, 2022
  • Chromosome-ReAD Public

    Chromosome-Recurrent Abnormality Detector (ReAD) is a neural network for automatically identifying structural rearrangements important in hematology oncology.

    DaehwanKimLab/Chromosome-ReAD’s past year of commit activity
    Jupyter Notebook 4 MIT 3 0 0 Updated Mar 20, 2022
  • seqwho Public

    SeqWho - A reliable and rapid FASTQ(A) file classifier

    DaehwanKimLab/seqwho’s past year of commit activity
    Python 11 GPL-3.0 1 1 0 Updated Jan 21, 2022
  • aws-indexes Public Forked from BenLangmead/aws-indexes

    Catalog of genomic indexes freely available from public clouds

    DaehwanKimLab/aws-indexes’s past year of commit activity
    Python 0 4 0 0 Updated Dec 1, 2021
  • hisat-genotype Public
    DaehwanKimLab/hisat-genotype’s past year of commit activity
    Python 28 GPL-3.0 14 37 3 Updated Aug 9, 2021
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