(ERR): Expected hisat2 to be in same directory with hisat2-align-s and hisat2-align-l:

[mcastilloli2]

Hi
I have installed hisat2 from the repository in github, I am trying to run this:

hisat2 -x yeast_index --known-splicesite-infile yeast_splice_sites.txt -U SRR453566_yeast_rnaseq_trimmed.fq.gz | samtools view -bS -o SRR453566_yeast_rnaseq.hisat.bam

and I get this above error: (ERR): Expected hisat2 to be in same directory with hisat2-align-s and hisat2-align-l:

The files are present, in a directory called msvcc.
How could i proceed?
(Total beginner here :-D)

[mourisl]

How did you install HISAT2? Have you run "make" to compile the code?