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1. u-probe u-probe Public

   Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.

   MATLAB 7 1

2. u-track u-track Public

   Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting even…

   MATLAB 47 21

3. u-track3D u-track3D Public

   Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.

   MATLAB 26 2

4. u-shape3D u-shape3D Public

   Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.

   MATLAB 29 6

5. u-signal3D u-signal3D Public

   The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cell surface, enabling comparison and machine-learning of signa…

   MATLAB 9 2

6. u-unwrap3D u-unwrap3D Public

   Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.

   Jupyter Notebook 22