[DR-3123] Migrate to vite

.github/workflows/dev-image-update.yaml

@@ -11,7 +11,6 @@ on:
       - 'cypress.json'
       - 'cypress/**'
       - 'Dockerfile'
-      - 'config-overrides.js'
       - '.github/workflows/dev-image-update.yaml'
 env:
   gcr_google_project: 'broad-jade-dev'

.github/workflows/lint.yml

@@ -8,7 +8,7 @@ jobs:
     timeout-minutes: 180
     strategy:
       matrix:
-        node-version: [14.x]
+        node-version: [16.x]
     if: "!contains( github.event.pull_request.labels.*.name, 'skip-ci')"
     runs-on: ubuntu-latest
     steps:

.github/workflows/test-e2e.yml

@@ -18,7 +18,7 @@ jobs:
     timeout-minutes: 180
     strategy:
       matrix:
-        node-version: [14.x]
+        node-version: [16.x]
     if: "!contains( github.event.pull_request.labels.*.name, 'skip-ci')"
     runs-on: ubuntu-latest
     steps:
@@ -61,7 +61,7 @@ jobs:
         env:
           DISABLE_ESLINT_PLUGIN: true
         run: |
-          npm start & npx wait-on http://localhost:3000
+          npm start & timeout 600 bash -c "until nc -z localhost 3000; do sleep 5; done"
       # Build the Docker image
       - name: Build
         run: |

.github/workflows/test-unit.yml

@@ -12,7 +12,7 @@ jobs:
     timeout-minutes: 60
     strategy:
       matrix:
-        node-version: [14.x]
+        node-version: [16.x]
     if: "!contains( github.event.pull_request.labels.*.name, 'skip-ci')"
     runs-on: ubuntu-latest
     steps:

.node-version

@@ -1 +1 @@
-12.22.12
+16.20.2

Dockerfile

@@ -11,7 +11,7 @@ RUN /usr/local/bin/docker-entrypoint.sh generate -g typescript-axios -i $TDR_OPE
 
 
 ## Step 2. Build the deployable UI artifacts
-FROM node:14.0-buster as build
+FROM node:16.20.2-buster as build
 # Check out the build
 RUN set -x \
   && git clone https://github.com/DataBiosphere/jade-data-repo-ui \
@@ -23,7 +23,7 @@ COPY --from=codegen /local /jade-data-repo-ui
 RUN cd jade-data-repo-ui \
   && export DISABLE_ESLINT_PLUGIN=true \
   && npm ci \
-  && npm run build-no-code-gen --production
+  && npm run build-no-code-gen
 
 ## Step 3. Copy the static UI artifacts into an nginx image to host
 FROM us.gcr.io/broad-dsp-gcr-public/base/nginx:stable-alpine

Dockerfile.direct

@@ -10,15 +10,15 @@ ARG TDR_OPEN_API_YAML_LOCATION
 RUN /usr/local/bin/docker-entrypoint.sh generate -g typescript-axios -i $TDR_OPEN_API_YAML_LOCATION -o /local/src/generated/tdr --skip-validate-spec
 
 ## Step 2. Build the deployable UI artifacts
-FROM node:14.0-buster as build
+FROM node:16.20.2-buster as build
 # Copy the local code
 COPY . /
 # Copy the generated code
 COPY --from=codegen /local /
 # Run the build
 RUN export DISABLE_ESLINT_PLUGIN=true && \
   npm ci && \
-  npm run build-no-code-gen --production
+  npm run build-no-code-gen
 
 ## Step 3. Copy the static UI artifacts into an nginx image to host
 FROM nginxinc/nginx-unprivileged:stable-alpine

README.md

@@ -20,8 +20,8 @@ nvm install 10.0.0
 rm -R ~/.avn (if you want to reset an existing or failed avn setup)
 nvm exec 10.0.0 npm install -g avn avn-nvm avn-n
 nvm exec 10.0.0 avn setup
-nvm install lts/erbium --default
-nvm use lts/erbium
+nvm install lts/gallium --default
+nvm use lts/gallium
 ```
 
 - Run `npm install` to download dependencies defined in the package.json file and generate the node_modules folder with the installed modules.
@@ -61,15 +61,14 @@ gcloud auth login --no-activate
 
 ### Development
 
-- webpack-dev-server 3.x
-- react-hot-loader 4.x
+- vite-dev-server 5.x
 - redux-devtools (with browser plugin)
 
 `npm start`
 
 ### Building
 
-- webpack 4.x
+- vite 4.x
 - babel 7.x
 
 `npm run build`
@@ -83,7 +82,7 @@ gcloud auth login --no-activate
 
 ### Testing
 
-- cypress 9.x
+- cypress 12.x
 
 To run end-to-end tests: `npx cypress run` or `npx cypress open` (interactive mode)
 

cypress.config.ts

@@ -0,0 +1,30 @@
+import { devServer } from '@cypress/vite-dev-server';
+import { defineConfig } from 'cypress';
+import vitePreprocessor from 'cypress-vite';
+import customViteConfig from './vite.config';
+
+export default defineConfig({
+  component: {
+    devServer(devServerConfig) {
+      return devServer({
+        ...devServerConfig,
+        framework: 'react',
+        viteConfig: customViteConfig,
+      });
+    },
+    specPattern: 'src/**/*test.{js,jsx,ts,tsx}',
+    supportFile: 'cypress/support/index.js',
+  },
+  e2e: {
+    setupNodeEvents(on) {
+      on('file:preprocessor', vitePreprocessor());
+    },
+    specPattern: 'cypress/integration/**/*.{js,jsx,ts,tsx}',
+    supportFile: 'cypress/support/index.js',
+  },
+  projectId: 'e6ttjx',
+  viewportWidth: 1920,
+  viewportHeight: 1080,
+  defaultCommandTimeout: 60000,
+  requestTimeout: 120000,
+});

cypress/integration/datasetSharing.spec.js

@@ -1,11 +1,11 @@
 describe('test dataset sharing', () => {
   beforeEach(() => {
-    cy.server();
-    cy.route('GET', 'api/repository/v1/datasets/**').as('getDataset');
-    cy.route('GET', 'api/repository/v1/datasets/**/policies').as('getDatasetPolicies');
-    cy.route('GET', 'api/repository/v1/datasets/**/roles').as('getDatasetRoles');
-
-    cy.route({ method: 'GET', url: 'api/resources/v1/profiles/**' }).as('getBillingProfileById');
+    cy.intercept('GET', 'api/repository/v1/datasets/**').as('getDataset');
+    cy.intercept('GET', 'api/repository/v1/datasets/**/policies').as('getDatasetPolicies');
+    cy.intercept('GET', 'api/repository/v1/datasets/**/roles').as('getDatasetRoles');
+    cy.intercept({ method: 'GET', url: 'api/resources/v1/profiles/**' }).as(
+      'getBillingProfileById',
+    );
 
     cy.visit('/login/e2e');
     cy.get('#tokenInput').type(Cypress.env('GOOGLE_TOKEN'), {

cypress/integration/errors.spec.js

@@ -1,9 +1,7 @@
 describe('test error handling', () => {
   beforeEach(() => {
-    cy.server();
-
-    cy.route('GET', 'api/repository/v1/datasets/**').as('getDataset');
-    cy.route('GET', 'api/repository/v1/datasets/**/policies').as('getDatasetPolicies');
+    cy.intercept('GET', 'api/repository/v1/datasets/**').as('getDataset');
+    cy.intercept('GET', 'api/repository/v1/datasets/**/policies').as('getDatasetPolicies');
 
     cy.visit('/login/e2e');
     cy.get('#tokenInput').type(Cypress.env('GOOGLE_TOKEN'), {
@@ -18,11 +16,9 @@ describe('test error handling', () => {
   });
 
   it('displays error toasts with error detail', () => {
-    cy.route({
-      method: 'GET',
-      url: '/api/repository/v1/datasets/**/data/**',
-      status: 401,
-      response: {
+    cy.intercept('GET', '/api/repository/v1/datasets/**/data/**', {
+      statusCode: 401,
+      body: {
         message: 'Was not able to query',
         errorDetail: ['This is the reason for the error'],
       },
@@ -35,11 +31,9 @@ describe('test error handling', () => {
   });
 
   it('displays error toasts with empty error detail', () => {
-    cy.route({
-      method: 'GET',
-      url: '/api/repository/v1/datasets/**/data/**',
-      status: 401,
-      response: {
+    cy.intercept('GET', '/api/repository/v1/datasets/**/data/**', {
+      statusCode: 401,
+      body: {
         message: 'Was not able to query',
         errorDetail: [],
       },
@@ -52,11 +46,9 @@ describe('test error handling', () => {
   });
 
   it('displays error toasts with no error detail', () => {
-    cy.route({
-      method: 'GET',
-      url: '/api/repository/v1/datasets/**/data/**',
-      status: 401,
-      response: {
+    cy.intercept('GET', '/api/repository/v1/datasets/**/data/**', {
+      statusCode: 401,
+      body: {
         message: 'Was not able to query',
       },
     }).as('getQueryResults');

cypress/integration/exportSnapshot.spec.js

@@ -1,8 +1,6 @@
 describe('test export snapshot', () => {
   beforeEach(() => {
-    cy.server();
-
-    cy.route('GET', 'api/repository/v1/snapshots/**').as('getSnapshot');
+    cy.intercept('GET', 'api/repository/v1/snapshots/**').as('getSnapshot');
 
     cy.visit('/login/e2e');
     cy.get('#tokenInput').type(Cypress.env('GOOGLE_TOKEN'), {
@@ -21,22 +19,18 @@ describe('test export snapshot', () => {
 
   it('exports to google sheets', () => {
     cy.contains(/Export Snapshot/g).click();
-    cy.route({
-      method: 'POST',
-      url: 'drive/v3/files',
-      status: 200,
-      response: {
+    cy.intercept('POST', 'drive/v3/files', {
+      statusCode: 200,
+      body: {
         kind: 'drive#file',
         id: '1dn_K-ehwE3SoVl-HzcUO0GuN3sYXAlKTfv5JF7RuTTU',
         name: 'V2FGWASSummaryStatisticsSnapshot1',
         mimeType: 'application/vnd.google-apps.spreadsheet',
       },
     }).as('createSpreadsheet');
-    cy.route({
-      method: 'POST',
-      url: 'googlesheets/v4/spreadsheets/**:batchUpdate',
-      status: 200,
-      response: {
+    cy.intercept('POST', 'googlesheets/v4/spreadsheets/**:batchUpdate', {
+      statusCode: 200,
+      body: {
         spreadsheetId: '1dn_K-ehwE3SoVl-HzcUO0GuN3sYXAlKTfv5JF7RuTTU',
         replies: [
           {

cypress/integration/queryBuilder.spec.js

@@ -12,11 +12,9 @@ const testPlatforms = [
 testPlatforms.forEach((testPlatform) => {
   describe(`test query builder on ${testPlatform.platform} dataset`, () => {
     beforeEach(() => {
-      cy.server();
-
-      cy.route('GET', 'api/repository/v1/datasets/**').as('getDataset');
-      cy.route('GET', 'api/repository/v1/datasets/**/policies').as('getDatasetPolicies');
-      cy.route('GET', 'api/resources/v1/profiles/**').as('getBillingProfileById');
+      cy.intercept('GET', 'api/repository/v1/datasets/**').as('getDataset');
+      cy.intercept('GET', 'api/repository/v1/datasets/**/policies').as('getDatasetPolicies');
+      cy.intercept('GET', 'api/resources/v1/profiles/**').as('getBillingProfileById');
 
       cy.visit('/login/e2e');
       cy.get('#tokenInput').type(Cypress.env('GOOGLE_TOKEN'), {