Add MPRAbase Dockerfile

DataBiosphere · May 26, 2023 · 7b2c397 · 7b2c397
1 parent c31c77a
commit 7b2c397
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/terra-jupyter-MPRAbase/Dockerfile b/terra-jupyter-MPRAbase/Dockerfile
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+FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.9
+RUN R -e "BiocManager::install(c('MPRAnalyze', 'MultiAssayExperiment','BiocStyle','iSEE', 'nullranges', 'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Hsapiens.UCSC.hg19'), dependencies=TRUE)"
+RUN R -e "install.packages('synapser', repos = c('http://ran.synapse.org', 'http://cran.fhcrc.org'))"
+RUN R -e "install.packages(c('paws.storage', 'urltools', 'testthat'), dependencies=TRUE)"