Fix Integration Tests (#5185)

* Use a pipes-free Cactus * Give the WDL Kubernetes cluster conformance tests a long time to run
DataBiosphere · Dec 12, 2024 · f8f3a98 · f8f3a98
1 parent 8e0d84a
commit f8f3a98
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diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -509,7 +509,7 @@ cactus_integration:
           - 'src/toil/test/cactus/test_cactus_integration.py'
   stage: integration
   script:
-    - export CACTUS_COMMIT_SHA=2d706d9c6637c85116533477693e6c73ed5b8a53
+    - export CACTUS_COMMIT_SHA=03295e9af99e2e9168ccd02e78a9f4c0c8dcd490
     - set -e
     - ${MAIN_PYTHON_PKG} -m virtualenv venv && . venv/bin/activate && make prepare && make develop extras=[aws]
     - python setup_gitlab_docker.py  # login to increase the docker.io rate limit

diff --git a/src/toil/test/wdl/wdltoil_test_kubernetes.py b/src/toil/test/wdl/wdltoil_test_kubernetes.py
@@ -14,7 +14,7 @@
 
 @integrative
 @slow
-@pytest.mark.timeout(600)
+@pytest.mark.timeout(1800)
 class WDLKubernetesClusterTest(AbstractClusterTest):
     """
     Ensure WDL works on the Kubernetes batchsystem.