wf: update #196
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| name: Build, test | |
| on: | |
| [pull_request,workflow_dispatch,push] | |
| jobs: | |
| build_test: | |
| name: Build and Test | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: ["ubuntu-latest", "macos-13", "macos-14",] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # - name: Setup miniconda | |
| # uses: conda-incubator/setup-miniconda@v3 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # mamba-version: "1.5" | |
| # activate-environment: build_test_env | |
| # channels: conda-forge | |
| # channel-priority: true | |
| - uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| micromamba-version: 'latest' | |
| # environment-file: environment.yml | |
| # environment-name: build | |
| init-shell: >- | |
| bash | |
| powershell | |
| # cache-environment: true | |
| # post-cleanup: 'all' | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - name: dependencies | |
| shell: bash -el {0} | |
| run: | | |
| # conda install mamba -c conda-forge | |
| micromamba create -n build python=${{matrix.python-version}} pip -c conda-forge | |
| micromamba activate build | |
| micromamba install boost-cpp 'gudhi>=3.10' 'numpy>=2' pot 'cython>=3' pytest scikit-learn matplotlib boost joblib tqdm scipy tbb tbb-devel -c conda-forge | |
| pip install pykeops filtration-domination --upgrade | |
| micromamba install c-compiler=1.6 cxx-compiler=1.6 -c conda-forge | |
| # if [[ ${{ matrix.os }} =~ "ubuntu-".* ]]; then | |
| # micromamba install cxx-compiler=1.6 -c conda-forge | |
| # fi | |
| # if [[ ${{ matrix.os }} =~ "windows-".* ]]; then | |
| # micromamba install cxx-compiler=1.6 -c conda-forge | |
| # fi | |
| - name: Build package | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate build | |
| if [[ ${{ matrix.os }} =~ "macos-".* ]]; then | |
| export CXXFLAGS="-fno-aligned-new" # Macos workaround | |
| export CFLAGS="-fno-aligned-new" # Macos workaround | |
| export MACOSX_DEPLOYMENT_TARGET="13.0" | |
| fi | |
| if [[ ${{ matrix.os }} =~ "ubuntu-".* ]]; then | |
| export CXXFLAGS="-march=x86-64-v3" # post haswell, for avx | |
| export CFLAGS="-march=x86-64-v3" | |
| export CPPFLAGS="-isystem $CONDA_PREFIX/include" | |
| fi | |
| if [[ ${{ matrix.os }} =~ "windows-".* ]]; then | |
| set LIBPATH=%LIBPATH%;C:\Miniconda\envs\build_test_env\Library\lib | |
| fi | |
| python setup.py build_ext -j4 --inplace bdist_wheel | |
| - name: Fix wheels on Linux and Macos | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate build | |
| if [[ ${{ matrix.os }} =~ "ubuntu-".* ]]; then | |
| cd dist | |
| micromamba install auditwheel -c conda-forge | |
| for wheel_file in multipers*linux*.whl; do | |
| auditwheel show $wheel_file | |
| auditwheel repair $wheel_file --plat manylinux_2_34_x86_64 | |
| rm $wheel_file | |
| done | |
| mv wheelhouse/*.whl . # retrieves repaired wheels | |
| cd .. | |
| fi | |
| if [[ ${{ matrix.os }} == "macos-13" ]]; then | |
| cd dist | |
| micromamba install delocate -c conda-forge | |
| for wheel_file in multipers*macosx*x86*.whl; do | |
| delocate-listdeps $wheel_file | |
| delocate-wheel --require-archs x86_64 -w wheelhouse -v $wheel_file | |
| rm $wheel_file | |
| done | |
| mv wheelhouse/*.whl . # retrieves repaired wheels | |
| cd .. | |
| fi | |
| if [[ ${{ matrix.os }} == "macos-14" ]]; then | |
| cd dist | |
| pip install delocate --upgrade | |
| for wheel_file in multipers*macosx*arm64*.whl; do | |
| delocate-listdeps $wheel_file | |
| delocate-wheel --require-archs arm64 -w wheelhouse -v $wheel_file | |
| rm $wheel_file | |
| done | |
| mv wheelhouse/*.whl . # retrieves repaired wheels | |
| cd .. | |
| fi | |
| - name: Install and Test | |
| shell: bash -el {0} | |
| run: | | |
| micromamba create -n test python=${{matrix.python-version}} pip pytest -c conda-forge | |
| micromamba activate test | |
| pip install dist/*.whl | |
| pytest multipers/tests |