fix: macos workflow #102
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| # This workflow will upload a Python Package using Twine when a release is created | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries | |
| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| name: Build, test, and Push to PyPI | |
| on: | |
| push: | |
| jobs: | |
| build_test: | |
| name: Build and Test | |
| # container: gudhi/pip_for_gudhi:latest # container allows to compile for older abis, but is not easy to setup... | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| os: ["ubuntu-latest", "macos-latest"] #windows fails for some reasons | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: build_test_env | |
| channels: conda-forge | |
| # channel-priority: true | |
| - name: Install build and test dependencies | |
| shell: bash -el {0} | |
| run: | | |
| if [[ ${{ matrix.os }} == "ubuntu-latest" ]]; then | |
| conda install mamba -c conda-forge | |
| mamba install python=${{matrix.python-version}} pip -c conda-forge | |
| mamba install numpy gudhi cython boost boost-cpp tbb tbb-devel pytest scikit-learn matplotlib build joblib tqdm scipy -c conda-forge | |
| mamba install cxx-compiler numpy gudhi cython boost boost-cpp tbb tbb-devel pytest scikit-learn matplotlib build joblib tqdm scipy -c conda-forge | |
| fi | |
| if [[ ${{ matrix.os }} == "macos-latest" ]]; then | |
| brew update || true | |
| ## boost doesn't need to be linked so brew is fine | |
| brew install boost || true | |
| pip install numpy cython gudhi pytest scikit-learn matplotlib joblib tqdm scipy --upgrade | |
| ### Installs TBB in the conda env for both archs (brew doesn't propose universal/fat builds) | |
| export ARCHFLAGS="-arch arm64 -arch x86_64" | |
| git clone --depth 1 https://github.com/oneapi-src/oneTBB.git | |
| cd oneTBB | |
| mkdir build && cd build | |
| cmake -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DCMAKE_OSX_ARCHITECTURES="arm64;x86_64" -DTBB_TEST=OFF .. | |
| cmake --build . -j4 | |
| cmake --install . | |
| cd ../.. | |
| #### | |
| fi | |
| pip install pykeops filtration-domination --upgrade | |
| - name: Build package | |
| shell: bash -el {0} | |
| run: | | |
| python setup.py sdist | |
| if [[ ${{ matrix.os }} == "macos-latest" ]]; then | |
| export CXXFLAGS="-fno-aligned-new" # Macos workaround | |
| export CFLAGS="-fno-aligned-new" # Macos workaround | |
| ## should compile for both architecture | |
| export MACOSX_DEPLOYMENT_TARGET="12.0" | |
| export _PYTHON_HOST_PLATFORM="macosx-12.0-universal2" | |
| python setup.py build_ext -j4 --inplace | |
| pip wheel . --wheel-dir dist | |
| fi | |
| if [[ ${{ matrix.os }} == "ubuntu-latest" ]]; then | |
| python setup.py build_ext -j2 --inplace | |
| pip wheel . --wheel-dir dist | |
| fi | |
| - name: Install and Test | |
| shell: bash -el {0} | |
| run: | | |
| pip install dist/*.whl | |
| pytest multipers/tests | |
| - name: Fix wheels on Linux and Macos | |
| shell: bash -el {0} | |
| run: | | |
| if [[ ${{ matrix.os }} == "ubuntu-latest" ]]; then | |
| cd dist | |
| pip install auditwheel --upgrade | |
| for wheel_file in multipers*linux*.whl; do | |
| auditwheel show $wheel_file | |
| auditwheel repair $wheel_file --plat manylinux_2_34_x86_64 | |
| rm $wheel_file | |
| done | |
| mv wheelhouse/*.whl . # retrieves repaired wheels | |
| cd .. | |
| fi | |
| if [[ ${{ matrix.os }} == "macos-latest" ]]; then | |
| cd dist | |
| pip install delocate --upgrade | |
| for wheel_file in multipers*macosx*.whl; do | |
| delocate-listdeps $wheel_file | |
| delocate-wheel --require-archs universal2 -w wheelhouse -v $wheel_file | |
| rm $wheel_file | |
| done | |
| mv wheelhouse/*.whl . # retrieves repaired wheels | |
| cd .. | |
| fi | |
| - name: Upload sources and wheel | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: sources | |
| path: dist | |
| send_to_pypi: | |
| name: Send sources and wheels | |
| runs-on: ubuntu-latest | |
| needs: [ build_test ] | |
| steps: | |
| - uses: actions/download-artifact@v3 | |
| with: | |
| name: sources | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Publish to PyPI | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_TOKEN }} | |
| run: | | |
| pip install --upgrade pip twine | |
| twine upload --skip-existing *.tar.gz # sources | |
| twine upload --skip-existing *.whl # wheels |