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Update DTEx212_single_particle_tracking.ipynb #346

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1ab955f
Update DTEx212_single_particle_tracking.ipynb
May 28, 2025
622e6d6
Update READNE-pypi.md
May 28, 2025
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Update README.md
May 28, 2025
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6 changes: 3 additions & 3 deletions README-pypi.md
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Expand Up @@ -97,13 +97,13 @@ Here you find a series of notebooks that give you an overview of the core featur

These are examples of how DeepTrack2 can be used on real datasets:

- DTEx211 **[MNIST](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx201_MNIST.ipynb)** <a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx201_MNIST.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg"></a>
- DTEx211 **[MNIST](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb)** <a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg"></a>

Training a fully connected neural network to identify handwritten digits using MNIST dataset.

- DTEx212 **Single Particle Tracking**
- DTEx212 **[Single Particle Tracking](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb)** <a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg"></a>

Tracks experimental videos of a single particle. (Requires opencv-python compiled with ffmpeg)
Tracks experimental videos of a single particle.



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20 changes: 3 additions & 17 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -101,32 +101,18 @@ Here you find a series of notebooks that give you an overview of the core featur

These are examples of how DeepTrack2 can be used on real datasets:

- DTEx211 **[MNIST](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx201_MNIST.ipynb)** <a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx201_MNIST.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg"></a>
- DTEx211 **[MNIST](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb)** <a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx211_MNIST.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg"></a>

Training a fully connected neural network to identify handwritten digits using MNIST dataset.

- DTEx212 **Single Particle Tracking**
- DTEx212 **[Single Particle Tracking](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb)** <a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx212_single_particle_tracking.ipynb"><img src="https://colab.research.google.com/assets/colab-badge.svg"></a>

Tracks experimental videos of a single particle. (Requires opencv-python compiled with ffmpeg)
Tracks experimental videos of a single particle.

<!-- GH_ONLY_START -->
<p align="left">
<img width="300" src=/assets/SPT-ideal.gif?raw=true>
<img width="300" src=/assets/SPT-noisy.gif?raw=true>
<br/>
<a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx202_single_particle_tracking.ipynb">
<img src="https://colab.research.google.com/assets/colab-badge.svg">
</a>
<a href="https://doi.org/10.1364/OPTICA.6.000506" alt="DeepTrack article">
<img src="https://img.shields.io/badge/article-10.1364/OPTICA.6.000506-blue">
</a>
<br/>
<a href="https://colab.research.google.com/github/DeepTrackAI/DeepTrack2/blob/develop/tutorials/2-examples/DTEx231B_LodeSTAR_tracking_particles_of_various_shapes.ipynb">
<img src="https://colab.research.google.com/assets/colab-badge.svg">
</a>
<a href="https://doi.org/10.1038/s41467-022-35004-y" alt="LodeSTAR article">
<img src="https://img.shields.io/badge/article-10.1038%2Fs41467--022--35004--y-blue">
</a>
</p>
<!-- GH_ONLY_END -->

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