fix(docs/reference): removed previous references (#84)

Deltares-research · Apr 13, 2022 · 70e9944 · 70e9944
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diff --git a/docs/guides/run_simulation_veg.md b/docs/guides/run_simulation_veg.md
@@ -1,5 +1,6 @@
 # How to run a Vegetation simulation in NBSDynamics
 
+An example of how a simulation is run can be found in the [acceptance tests](../../test/test_acceptance.py#TestAcceptance::test_given_veg_case_runs)
 
 ## Simulation structure.
 

diff --git a/docs/reference/biota_models/coral/coral_model.md b/docs/reference/biota_models/coral/coral_model.md
@@ -1,14 +1,14 @@
 ## Coral models for the NBSDynamics package.
 
 ### Coral Protocol
-::: src.core.coral.coral_protocol
+::: src.biota_models.coral.model.coral_protocol
 
 ### Coral model
-::: src.core.coral.coral_model
+::: src.biota_models.coral.model.coral_model
 
 ## Coral Constants
-::: src.core.coral.coral_constants
+::: src.biota_models.coral.model.coral_constants
 
 ## Coral utils
-::: src.core.coral.coral_morphology
-::: src.core.coral.coral_only
+::: src.biota_models.coral.model.coral_morphology
+::: src.biota_models.coral.model.coral_only
diff --git a/docs/reference/biota_models/coral/coral_output.md b/docs/reference/biota_models/coral/coral_output.md
@@ -1,7 +1,7 @@
 ## Output classes for the NBSDynamics coral model.
 
 ### Wrapper
-::: src.core.output.coral_output_wrapper
+::: src.biota_models.coral.output.coral_output_wrapper
 
 ### Output models
-::: src.core.output.coral_output_model
+::: src.biota_models.coral.output.coral_output_model
diff --git a/docs/reference/biota_models/vegetation/vegetation_output.md b/docs/reference/biota_models/vegetation/vegetation_output.md
@@ -1,7 +1,7 @@
 ## Output classes for the NBSDynamics vegetation model.
 
 ### Wrapper
-::: src.core.output.veg_output_wrapper
+::: src.biota_models.vegetation.output.veg_output_wrapper
 
 ### Output models
-::: src.core.output.veg_output_model
+::: src.biota_models.vegetation.output.veg_output_model
diff --git a/docs/reference/biota_models/vegetation/vegetation_simulation.md b/docs/reference/biota_models/vegetation/vegetation_simulation.md
@@ -1,7 +1,7 @@
 ## Classes representing the available simulation modes.
 
 ### Base simulation.
-::: src.core.simulation.veg_base_simulation
+::: src.biota_models.vegetation.simulation.veg_base_simulation
 
 ### Vegetation Delft3D (FlowFM / DIMR)
-::: src.core.simulation.veg_delft3d_simulation
+::: src.biota_models.vegetation.simulation.veg_delft3d_simulation