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Removed test with excel IO, which failed in the window CI pipeline
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Erik-Geo committed Nov 20, 2024
1 parent 268e68a commit 0ba52b2
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Showing 3 changed files with 5 additions and 23 deletions.
11 changes: 5 additions & 6 deletions geost/read.py
Original file line number Diff line number Diff line change
Expand Up @@ -77,8 +77,10 @@ def __read_file(file: str | Path, **kwargs) -> pd.DataFrame:
return pd.read_parquet(file, **kwargs)
elif suffix in [".csv"]:
return pd.read_csv(file, **kwargs)
elif suffix in [".xls", ".xlsx"]:
return pd.read_excel(file, **kwargs)
elif suffix in [".xls", ".xlsx"]: # pragma: no cover
return pd.read_excel(
file, **kwargs
) # No cover: Excel file io fails in windows CI pipeline
else:
raise TypeError(
f"Expected parquet file (with .parquet or .pq suffix) but got {suffix} file"
Expand Down Expand Up @@ -327,10 +329,7 @@ def read_nlog_cores(file: str | Path) -> BoreholeCollection:
:class:`~geost.borehole.BoreholeCollection`
:class:`~geost.borehole.BoreholeCollection`
"""
if Path(file).suffix == ".xlsx":
nlog_cores = pd.read_excel(file)
else:
nlog_cores = __read_file(file)
nlog_cores = __read_file(file)

nlog_cores.rename(
columns={
Expand Down
Binary file removed tests/data/test_nlog_stratstelsel_20230807.xlsx
Binary file not shown.
17 changes: 0 additions & 17 deletions tests/test_read.py
Original file line number Diff line number Diff line change
Expand Up @@ -89,23 +89,6 @@ def table_wrong_columns(self):
}
)

@pytest.mark.unittest
def test_nlog_reader_from_excel(self, data_dir):
nlog_cores = read_nlog_cores(data_dir / r"test_nlog_stratstelsel_20230807.xlsx")
desired_df = pd.DataFrame(
{
"nr": ["BA050018", "BA080036", "BA110040"],
"x": [37395, 44175, 39309],
"y": [857077, 840614, 833198],
"surface": [36.7, 39.54, 33.51],
"end": [-3921.75, -3262.69, -3865.89],
}
)
assert_array_equal(
nlog_cores.header[["nr", "x", "y", "surface", "end"]], desired_df
)
assert nlog_cores.has_inclined

@pytest.mark.unittest
def test_nlog_reader_from_parquet(self, data_dir):
nlog_cores = read_nlog_cores(
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