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MOFA: >1TB RAM needed for ATAC #308

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wlason opened this issue Aug 20, 2024 · 0 comments
Open

MOFA: >1TB RAM needed for ATAC #308

wlason opened this issue Aug 20, 2024 · 0 comments
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@wlason
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wlason commented Aug 20, 2024

I see that for datasets >100k cells, over 1TB of RAM is needed to run MOFA with default HVF selection.
To lower the memory requirements, subsetting to a lower number of ATAC peaks, such as 25k, solves the issue.

I also asked MOFA developers to give an indication of how much RAM is typically needed: bioFAM/mofapy2#32

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