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Instead of filling in and passing pio_rearr_opt_t type in pio_init, we now use pio_set_rearr_opts() interface to set the rearranger options. This change decouples the cime shared code from pio by avoiding accessing the internal pio type (pio_rearr_opt_t) to set the rearranger options. This change requires pio1 to support the pio_set_rearr_opts() interface. Fixes #1296
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