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Merge branch 'jgfouca/cmake_blas_lapack' into next (PR #5972)
Convert blas/lapack/mkl to new cmake style This was a more challenging task than I thought it would. FindBLAS / FindLAPACK are built in to cmake and can also handle MKL stuff via the BLA_VENDOR setting (if you set it to Intel... you get various flavors of MKL). For machines that looked like they were trying to use MKL in their cache files, I added set(BLA_VENDOR Intel10_64_dyn). I'm not 100% sure this is what we want in all cases, but it should at least get us building and running. Machine POCs should refine the settings on their machines using https://cmake.org/cmake/help/latest/module/FindBLAS.html#blas-lapack-vendors as as guide. I suspect many of these cache files were copy/pasted without a ton of consideration. The documentation indicates that the find modules for blas may be smart enough to auto detect the bla_vendor: BLA_VENDOR Set to one of the [BLAS/LAPACK Vendors] to search for BLAS only from the specified vendor. If not set, all vendors are considered. Once again, I am impressed at how much clutter is removed when we do things t "right" (using find_package instead of packing stuff into SLIBS) way. [BFB]
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Original file line number | Diff line number | Diff line change |
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@@ -1,7 +1,8 @@ | ||
#!/bin/bash | ||
|
||
wget -t 3 -O e3sm.sif http://portal.nersc.gov/project/e3sm/lukasz/e3sm.sif || \ | ||
wget -t 3 -O e3sm.sif https://dabdceba-6d04-11e5-ba46-22000b92c6ec.e.globus.org/containers/public/e3sm.sif | ||
singularity pull e3sm.sif \ | ||
docker://ghcr.io/mahf708/e3sm-imgs@sha256:d1030a6f4e3a53f682859436a26b30a9477d69423829ae1d9c1b5ab4e255430d | ||
|
||
if [ $? -ne 0 ]; then | ||
exit -1 | ||
fi |
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Original file line number | Diff line number | Diff line change |
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@@ -1,4 +1,2 @@ | ||
set(HDF5_PATH "$ENV{HDF5_PATH}") | ||
set(LAPACK_LIBDIR "$ENV{BLASLAPACK_LIBDIR}") | ||
set(CXX_LINKER "CXX") | ||
string(APPEND SLIBS " -L${LAPACK_LIBDIR} -lblas -llapack") |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,4 @@ | ||
set(PIO_FILESYSTEM_HINTS "lustre") | ||
set(MPICXX "mpic++") | ||
string(APPEND SLIBS " -llapack -lblas") | ||
string(APPEND SLIBS " $ENV{MKLROOT}/lib/intel64/libmkl_scalapack_lp64.a -Wl,--start-group $ENV{MKLROOT}/lib/intel64/libmkl_intel_lp64.a $ENV{MKLROOT}/lib/intel64/libmkl_core.a $ENV{MKLROOT}/lib/intel64/libmkl_sequential.a -Wl,--end-group $ENV{MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.a -lpthread -lm -lz") | ||
set(BLA_VENDOR Intel10_64_dyn) | ||
string(APPEND CXX_LIBS " -lstdc++") |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,4 @@ | ||
string(APPEND FFLAGS " -O -fno-range-check") | ||
set(HDF5_PATH "/software/dev_tools/swtree/cs400_centos7.2_pe2016-08/hdf5-parallel/1.8.17/centos7.2_gnu5.3.0") | ||
set(LAPACK_LIBDIR "/software/tools/compilers/intel_2017/mkl/lib/intel64") | ||
set(MPICXX "mpic++") | ||
set(SCXX "gcpp") |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,4 @@ | ||
set(PIO_FILESYSTEM_HINTS "lustre") | ||
set(MPICXX "mpic++") | ||
string(APPEND SLIBS " -llapack -lblas") | ||
string(APPEND SLIBS " $ENV{MKLROOT}/lib/intel64/libmkl_scalapack_lp64.a -Wl,--start-group $ENV{MKLROOT}/lib/intel64/libmkl_intel_lp64.a $ENV{MKLROOT}/lib/intel64/libmkl_core.a $ENV{MKLROOT}/lib/intel64/libmkl_sequential.a -Wl,--end-group $ENV{MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.a -lpthread -lm -lz") | ||
set(BLA_VENDOR Intel10_64_dyn) | ||
string(APPEND CXX_LIBS " -lstdc++") |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,9 +1,7 @@ | ||
set(LAPACK_LIBDIR "$ENV{LAPACK_DIR}/lib") | ||
if (NOT DEBUG) | ||
string(APPEND CFLAGS " -O2") | ||
endif() | ||
string(APPEND CXX_LIBS " -lstdc++ -lmpi_cxx") | ||
if (NOT DEBUG) | ||
string(APPEND FFLAGS " -O2") | ||
endif() | ||
string(APPEND SLIBS " -lblas -llapack") |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +0,0 @@ | ||
string(APPEND SLIBS " -lblas -llapack") | ||
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