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EFO release 3.62.0 #2165

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Jan 15, 2024
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EFO release 3.62.0 #2165

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14,136 changes: 826 additions & 13,310 deletions ExFactor Ontology release notes.txt
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40 changes: 20 additions & 20 deletions efo-base.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:patterns="http://www.co-ode.org/patterns#">
<owl:Ontology rdf:about="http://www.ebi.ac.uk/efo/efo-base.owl">
<owl:versionIRI rdf:resource="http://www.ebi.ac.uk/efo/releases/v3.61.0/efo-base.owl"/>
<owl:versionIRI rdf:resource="http://www.ebi.ac.uk/efo/releases/v3.62.0/efo-base.owl"/>
<obo:format-version>1.4</obo:format-version>
<dc:creator>Catherine Leroy</dc:creator>
<dc:creator>Dani Welter</dc:creator>
Expand All @@ -41,7 +41,7 @@ Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you ma
License. </dc:rights>
<terms:license>www.apache.org/licenses/LICENSE-2.0</terms:license>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-01-15</rdfs:comment>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">3.61.0</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">3.62.0</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -33989,7 +33989,7 @@ New Label : Chronic granulomatous disease</efo:reason_for_obsolescence>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>myeloid leukemia, chronic</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">DOID:8552</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/chronic</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/chronic</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MTH:NOCODE</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
Expand Down Expand Up @@ -110719,7 +110719,7 @@ A Jiyoye is bearer of a Burkitt&apos;s lymphoma.</obo:IAO_0000115>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002422"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>neoplasm (disease), benign</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_0002422"/>
Expand Down Expand Up @@ -522753,7 +522753,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>ependymoma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
Expand Down Expand Up @@ -522784,7 +522784,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>ependymoma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000028"/>
Expand Down Expand Up @@ -533761,7 +533761,7 @@ Label : Disorder of carbohydrate metabolism</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000106"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>adrenal gland pheochromocytoma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000106"/>
Expand Down Expand Up @@ -534029,7 +534029,7 @@ Label : Disorder of carbohydrate metabolism</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000108"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>carotid body paraganglioma, benign</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000108"/>
Expand Down Expand Up @@ -566253,7 +566253,7 @@ Label : Disorder of carbohydrate metabolism</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000348"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>adrenal gland pheochromocytoma, malignant</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000348"/>
Expand Down Expand Up @@ -566781,7 +566781,7 @@ Label : malignant epithelioid mesothelioma</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000352"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>germ cell tumor, malignant</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000352"/>
Expand Down Expand Up @@ -567653,7 +567653,7 @@ Label : malignant epithelioid mesothelioma</efo:reason_for_obsolescence>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>mesothelioma, malignant</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:Lexical</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C4456</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>OMIM:156240</oboInOwl:hasDbXref>
</owl:Axiom>
Expand Down Expand Up @@ -567915,7 +567915,7 @@ Label : malignant epithelioid mesothelioma</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000356"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>mixed neoplasm, malignant</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000356"/>
Expand Down Expand Up @@ -569273,7 +569273,7 @@ Label : malignant epithelioid mesothelioma</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000366"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>mediastinal germ cell tumor, malignant</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000366"/>
Expand Down Expand Up @@ -584339,7 +584339,7 @@ Use: http://www.ebi.ac.uk/efo/EFO_0000197 Label: mucinous carcinoma</efo:reason_
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1000485"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>pleural mesothelioma (disease), benign</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/benign</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/benign</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -661695,7 +661695,7 @@ Label: Moebius syndrome</efo:reason_for_obsolescence>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001080"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>pulmonary sulcus neoplasm, malignant</owl:annotatedTarget>
<oboInOwl:hasDbXref>MONDO:patterns/malignant</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/malignant</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001080"/>
Expand Down Expand Up @@ -706477,7 +706477,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Orphanet:98823</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>SCTID:127225006</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>UMLS:C0023480</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CMML</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>CMML</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">chronic myelomonocytic leukaemia (CMML)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>chronic myelomonocytic leukemia</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym>chronic myelomonocytic leukemia (CMML)</oboInOwl:hasExactSynonym>
Expand Down Expand Up @@ -706628,7 +706628,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001779"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CMML</owl:annotatedTarget>
<owl:annotatedTarget>CMML</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C3178</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OMIM:607785</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Orphanet:98823</oboInOwl:hasDbXref>
Expand All @@ -706637,7 +706637,7 @@ Pain Agnosia, also known as analgesia, is related to chronic pain requiring intr
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001779"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CMML</owl:annotatedTarget>
<owl:annotatedTarget>CMML</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C3178</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Orphanet:98823</oboInOwl:hasDbXref>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/mondo#ABBREVIATION"/>
Expand Down Expand Up @@ -715868,7 +715868,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>acute monocytic leukemia of adults</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:design_pattern</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/adult</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/adult</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001933"/>
Expand Down Expand Up @@ -716141,7 +716141,7 @@ It is caused by a number of types of infection such as bacteria, viruses, parasi
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>B-cell childhood acute lymphoblastic leukemia of adults</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:design_pattern</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MONDO:patterns/adult</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>MONDO:patterns/adult</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://www.ebi.ac.uk/efo/EFO_1001935"/>
Expand Down
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