Merge pull request #82 from EBISPOT/gwas-sumstats-harmoniser-goci1179…

…-slurm-migration feat: Migrate from LSF to SLURM
EBISPOT · Dec 11, 2023 · a2a2f47 · a2a2f47
2 parents f053c58 + 4cbb8b9
commit a2a2f47
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/example_wrapper.sh b/example_wrapper.sh
@@ -13,4 +13,4 @@ mkdir -p $folder
 
 cd $folder
 nextflow $nextflow -c $config --inputPath $folder --to_harm_folder $to_harm -resume 
-#further function: --execute local(or LSF)
+#further function: --execute local (or SLURM)
diff --git a/nextflow.config b/nextflow.config
@@ -87,9 +87,9 @@ profiles {
         process.executor = 'local'
     }
     cluster {
-        process.executor = 'lsf'
-        process.queue = 'short'
+        process.executor = 'slurm'
         process.memory = '28GB'
+        process.time = '2d'
     }
     conda {
         params.enable_conda    = true