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v1.1.8 Slurm harmonisation pipeline for GWAS_SSF
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@jiyue1214 jiyue1214 released this 11 Jun 08:28
· 50 commits to master since this release
v1.1.8
c4e302d
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Learn about vigilant mode.
  1. Change the cluster setting from LSF to SLURM
  2. Convert neg_log_10_p_value to normal p_value
  3. Update the gwas-sumstats-tools version to 1.0.6 since the metadata field is updated, especially the field date_metadata_last_modified is renamed
  4. Add procps in the docker image to allow nf tower to generate the matrix
  5. Tag each process so that we can know the GCST id within one process even though their output name is the same.
  6. Update the test.config file to recognise the test data are in the $NXF_ASSETS folder or $HOME/.nextflow/asset folder
  7. Update the test yaml data since we updated the field date_last_modified as date_metadata_last_modified
  8. Allow the yaml file to be accessible by the count the strand direction step.
  9. Combine the harmonisation channel with unmapped channel to generate the log file

What's Changed

Full Changelog: v1.0.7...v1.1.8

Contributors

jiyue1214
Assets 2
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