v1.1.4

What's Changed

• feat: Migrate from LSF to SLURM by @karatugo in #82

Full Changelog: v1.1.3...v1.1.4

v1.0.5

What's Changed

• feat: Migrate from LSF to SLURM by @karatugo in #82

Full Changelog: v1.0.4...v1.0.5

v1.1.3

• Parse genome build from filename/yaml
• Output format

v1.0.3

• build the image on pre-gwas-ssf branch
• Keep all harmonisation step same, and the only difference is the pre-ssf recognise the variant_id column as rsid

v1.0.2

• Genome build parsing from filename/yaml
• Output format

v1.1.2

• change bp to str, to prevent the .0 in bp
• not output headers for counting the direction of variants
• allow -coordinate to be empty and set default as 1-based

v1.1.1

• For the gwas-ssf new format
• Fix retry strategy

v1.1.0

• Utilise metadata available for harmonisation and qc step (#49 )
• Output format inline with standard (#50 )
• Handle different coordinate systems (#70 )

v1.0.1

• Allow for csv and tsv inputs
• Allow for missing variant id or missing chrom + position

v1.0.0

• Harmonisation pipeline managed with Nextflow!
• Tabix indexed outputs.
• Running log summarises transformations and failed sites.
• Added field: hm_coordinate_conversion for storing coordinate conversion method. 'lo': LiftOver, 'rs': rsID lookup.