With contig alias #112
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With contig alias #112
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and parsing the content. Added the necessary code to retrieve the fasta file related to a specific assembly. Parsing the file and saving related information alongside the Contig-alias Backend
- Retrieve the assembly report and the fasta file of a given accession - Parse the file and retrieve the assembly sequences - Hash the sequences and using md5 algorithm - Construct the level 2 sequence collection object - We can also use the function of the retrieval of the fasta file independently and save the sequences in a separate table
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@tcezard
This is PR contains the code for the function of the retrieval of the fasta file, parsing it and save the related sequences in the database.
It also contains the service for combining both the retrieval of the assembly report and the corresponding fasta file and constructing the seqCol Level 2 using the information extracted from these files.
Tests will be made for each functionality to assure their efficiency.