Date: 5 October 2021
Description: Code of the internship of Dean de Haas. Goal is to assess the assumptions used by CSOmap and novoSpaRc in order to reconstruct cellular organization using scRNA-seq data
Project participants: Dean de Haas (student), Perry Moerland (supervisor)
This repository contains the code needed to preprocess the scRNA-seq data and the code used for calculating and plotting the correlation between the reconstructed tissue and the original tissue.
The original data files can be found at https://drive.google.com/drive/folders/1zmrrXcdz-WZ6dW1MxZqYsj_O0Zq3DgTk?usp=sharing.
The thesis can be found at https://www.overleaf.com/8697663533xkwrdszmdgmt