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This is a repository to build a Galaxy container which can be used to remove human traces from sequence reads and upload raw SARS-Cov-2 sequences to ENA.

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ELIXIR-Belgium/ena-upload-container

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ENA upload container

This is a repository to build a Galaxy container to upload raw reads to ENA

Build command:

docker build -t ena-upload -f Dockerfile .    

Run how to run:

docker run -p "8080:80" -v <absolute path>/.secret:/.secret -e WEBIN_ID="Webin-*****" -e WEBIN_SECRET="/.secret" --privileged quay.io/galaxy/ena-upload

On windows make sure that the directory of the .secret file is added as a resource in the data sharing section of the settings of docker.

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This is a repository to build a Galaxy container which can be used to remove human traces from sequence reads and upload raw SARS-Cov-2 sequences to ENA.

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