Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

cromwell works, caper doesn't #182

Open
mapostolides opened this issue Jul 25, 2022 · 0 comments
Open

cromwell works, caper doesn't #182

mapostolides opened this issue Jul 25, 2022 · 0 comments

Comments

@mapostolides
Copy link

Hello, I'm running a basic test script and I'm getting the following error:

caper run test2.wdl

2022-07-25 11:19:48,827|caper.cromwell|INFO| Workflow failed. Auto-troubleshooting...
* Started troubleshooting workflow: id=10ce604e-106b-4490-98c2-21cc4a38ad69, status=Failed
* Found failures JSON object.
[
    {
        "causedBy": [
            {
                "message": "Task hello has an invalid runtime attribute memory = !! NOT FOUND !!",
                "causedBy": []
            }
        ],
        "message": "Runtime validation failed"
    }
]

However, when I run it with cromwell directly I get no such error:

java -jar cromwell-65.jar run test2.wdl

4074aa71b [1d5b6b64]: Workflow myWorkflow complete. Final Outputs:
{
  "myWorkflow.myTask.out": "hello world"
}

The WDL script I'm using is as follows:

workflow myWorkflow {
    call myTask
}

task myTask {
    command {
        echo "hello world"
    }
    output {
        String out = read_string(stdout())
    }
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant