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27 Open 60 Closed
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Issues list

Compatibility Update for Caper with Google Batch Following Deprecation of Cloud Life Sciences
#205 opened May 5, 2024 by TarjinderSingh
using slurm-extra-param and the leader job
#204 opened Apr 5, 2024 by giardine
Setting $SINGULARITY_TMPDIR environment variable
#203 opened Dec 11, 2023 by miller-alexander
--slurm-extra-param: expected one argument
#202 opened Dec 6, 2023 by OrangeyO2
1
Caper conda forge
#200 opened Aug 18, 2023 by atb1r21
Cannot run on lsf system, not sure if exit code 127 is the reason
#196 opened Jul 12, 2023 by Jixuan-Huang
6
caper halted
#195 opened Jun 28, 2023 by zji90
LSF job parameter error
#192 opened Apr 6, 2023 by jwtobias
3
apptainer
#191 opened Mar 17, 2023 by ad2n15
1
Normalization
#187 opened Oct 28, 2022 by nicholas-moskwa
Relative paths to data files are not accessible by Singularity containers
#184 opened Oct 3, 2022 by jgoodson
4
cromwell works, caper doesn't
#182 opened Jul 25, 2022 by mapostolides
caper init slurm not working
#175 opened Jul 14, 2022 by mapostolides
6
idr threshold
#167 opened Apr 9, 2022 by shinlin77
1
getting Cromwell error
#161 opened Mar 26, 2022 by shinlin77
1
Setting up MYSQL Metadata database - Unable connect to local MySQL server through socket
#146 opened Oct 14, 2021 by sfpacman
1
Can GCP backend use Genomics API?
#141 opened Aug 26, 2021 by yihming
~/.caper/default.conf file isn't created after caper init
#130 opened Jun 23, 2021 by xinmiaoyan
1
Womtool validation doesn't raise an exception
#124 opened May 19, 2021 by Bek
1
PBS qsub Node Specification Error
#118 opened May 13, 2021 by CriticalSci
4
how to easily find metadata.json file after run
#105 opened Dec 9, 2020 by dfeinzeig
1
metadata.json has changed significantly
#102 opened Nov 16, 2020 by biodavidjm
4
caper submit leader job but no children jobs on slurm HPC
#101 opened Nov 10, 2020 by alexyfyf
4
how to set up LSF specific conf file for caper
#93 opened Sep 22, 2020 by ls233
20
Singularity backend
#64 opened Apr 6, 2020 by guma44
2
ProTip! no:milestone will show everything without a milestone.