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I am trying to run the pipeline in a hpc cluster setting and I want to pass some extra parameters to sbatch.
My command is
caper hpc submit ...
--slurm-extra-param " --mail-type=END --mail-type=FAIL --mail-user=email@address"
As per previous issue #27 I included a space in front of the first dash inside the double quotes.
The command works fine without the --slurm-extra-param but as soon as I include that last bit, I instantly get an error with the usage listed as well as the "expected one argument" error.
usage: caper run [-h] [-c CONF] [-D]
...
caper run: error: argument --slurm-extra-param: expected one argument
It would be great if I could get some help on this, thank you!
The text was updated successfully, but these errors were encountered:
Hello
I am trying to run the pipeline in a hpc cluster setting and I want to pass some extra parameters to sbatch.
My command is
caper hpc submit ...
--slurm-extra-param " --mail-type=END --mail-type=FAIL --mail-user=email@address"
As per previous issue #27 I included a space in front of the first dash inside the double quotes.
The command works fine without the --slurm-extra-param but as soon as I include that last bit, I instantly get an error with the usage listed as well as the "expected one argument" error.
usage: caper run [-h] [-c CONF] [-D]
...
caper run: error: argument --slurm-extra-param: expected one argument
It would be great if I could get some help on this, thank you!
The text was updated successfully, but these errors were encountered: