Skip to content

ERRMoody/nicescripts

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

58 Commits
16scode
16scode
 
 
ALE_OR_from_table_per_gene.sbatch
ALE_OR_from_table_per_gene.sbatch
 
 
COG_info.py
COG_info.py
 
 
DOES_REC_EXIST.sh
DOES_REC_EXIST.sh
 
 
Gatekeeper.py
Gatekeeper.py
 
 
Gatekeeper2.py
Gatekeeper2.py
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
Supplementary_Tables_1_to_6.zip
Supplementary_Tables_1_to_6.zip
 
 
ale_fixer.py
ale_fixer.py
 
 
ale_switcharoo.py
ale_switcharoo.py
 
 
aminoacidprop.py
aminoacidprop.py
 
 
annotations_getter.py
annotations_getter.py
 
 
arc_bac_counter.py
arc_bac_counter.py
 
 
biolistcompare.py
biolistcompare.py
 
 
cell_counter.py
cell_counter.py
 
 
deletetaxafromlist.py
deletetaxafromlist.py
 
 
duplicate_killer.py
duplicate_killer.py
 
 
dupremover.py
dupremover.py
 
 
edscolour.py
edscolour.py
 
 
ensemblid.py
ensemblid.py
 
 
entrez.py
entrez.py
 
 
entrez_taxa_info.py
entrez_taxa_info.py
 
 
fas2phy.py
fas2phy.py
 
 
fas2phy_withnumber.py
fas2phy_withnumber.py
 
 
gene_getter.py
gene_getter.py
 
 
genome_getter.py
genome_getter.py
 
 
get_gene_from_list.py
get_gene_from_list.py
 
 
get_seq_from_hmm_regular.py
get_seq_from_hmm_regular.py
 
 
getseqfromblast.py
getseqfromblast.py
 
 
homolog_getter.py
homolog_getter.py
 
 
idlist.csv
idlist.csv
 
 
listfiles
listfiles
 
 
merge_for_optimization_rates_for_mean_COG_cateogries.py
merge_for_optimization_rates_for_mean_COG_cateogries.py
 
 
multifastatosingle.sh
multifastatosingle.sh
 
 
ninabashALEfixer.sh
ninabashALEfixer.sh
 
 
no_lengths.py
no_lengths.py
 
 
remove_from_list_v2.py
remove_from_list_v2.py
 
 
rename.py
rename.py
 
 
revlog2fasta.py
revlog2fasta.py
 
 
sed_NCBI.txt
sed_NCBI.txt
 
 
seq_from_domain_hmmtbl.py
seq_from_domain_hmmtbl.py
 
 
seqprepend.sh
seqprepend.sh
 
 
speciesentrez.py
speciesentrez.py
 
 
state2fasta.py
state2fasta.py
 
 
tree_pruner.py
tree_pruner.py
 
 
tsv_reader.py
tsv_reader.py
 
 
write_constraint_tree_ATP.py
write_constraint_tree_ATP.py
 
 

Repository files navigation

nicescripts

Collection of handy biological scripts, mainly usio Biopython libraries, designed to be used with the command-line via sys.argv, mainly for preparing fasta-files for phylogenetic software

About

Collection of handy scripts for phylogenomics work

Resources

Readme

License

Apache-2.0 license
Activity

Stars

0 stars

Watchers

0 watching

Forks

0 forks
Report repository

Releases

No releases published

Packages

No packages published

Languages