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Add unit test for making fsurdat with all crops everywhere #2079

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samsrabin opened this issue Jul 27, 2023 · 2 comments · Fixed by #2081
Closed
2 tasks

Add unit test for making fsurdat with all crops everywhere #2079

samsrabin opened this issue Jul 27, 2023 · 2 comments · Fixed by #2081
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@samsrabin
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testing additions or changes to tests

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@samsrabin
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Given a surface dataset file, make_fsurdat_all_crops_everywhere.py makes a version of it that has (a) all natural land moved into cropland and (b) cropland split evenly among all CFTs. This special file is used to generate prescribed crop maturity requirements, with the idea being that we want a value for every crop in every gridcell regardless of whether the crop is currently there.

@ekluzek suggested, rightly, that I add a unit test for this script. Things to test:

  • Every land gridcell has PCT_CROP > 0
  • Every land gridcell has PCT_CFT > 0 for all crops

I should be able to use the existing surface datasets in python/ctsm/test/testinputs/ for this.
@samsrabin samsrabin added the testing additions or changes to tests label Jul 27, 2023
@samsrabin samsrabin self-assigned this Jul 27, 2023
@samsrabin samsrabin mentioned this issue Jul 31, 2023
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@samsrabin
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Hmm. In searching for an example of a Python test, I realized that this functionality should probably just be built into the existing modify_fsurdat.py, rather than being an entirely separate (although small) script.

Tagging @slevis-lmwg, whose work seems to dominate the git blame for that. What do you think?

@slevis-lmwg
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slevis-lmwg commented Aug 2, 2023 •
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[...] this functionality should probably just be built into the existing modify_fsurdat.py, rather than being an entirely separate (although small) script.

@samsrabin you are likely correct OR the functionality already exists in the modify_fsurdat tool's function read_cfg_subgrid.

@ekluzek added the section of code that may already do what you need, and I have not tried this functionality. I would be happy to meet with you to go over how the tool works, and then try out whether such functionality already exists.

@samsrabin samsrabin changed the title Add unit test for make_fsurdat_all_crops_everywhere.py Add unit test for making fsurdat with all crops everywhere Aug 2, 2023
samsrabin added a commit that referenced this issue Sep 19, 2023
@samsrabin
Merge 5 bit-for-bit pull requests:
2e2434d 
* Add system and unit tests for making fsurdat with all crops everywhere (#2081)
* Rework master_list* files etc. (#2087)
* Fixes to methane Tech Note (#2091)
* Add is_doy_in_interval() function (#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (#2079)
* Rework master_list_(no)?fates.rst? (#2083)
* conda run -n can fail if a conda environment is already active (#2109)
* conda fails to load for SystemTests (#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Sep 19, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into newcropcals-rxsowwindow
8537757 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Sep 20, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into newcropcals-rxsowwindow
ff687dc 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Sep 21, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into newcropcals-rxsowwindow
1382c5d 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Sep 27, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into hist-anomalies
1e1b604 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Oct 2, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into tillage
d43c617 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Oct 3, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into tillage-and-residues3
0d36638 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Oct 4, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into hillslope_hydrology-ssr
595d95d 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Oct 5, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into soil-gas-diffusivity-bugfix
d369f8d 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
samsrabin added a commit to samsrabin/CTSM that referenced this issue Dec 23, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into tillage-mike-merge142
19c4790 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)

# Conflicts:
#	src/biogeochem/CNBalanceCheckMod.F90
#	src/biogeochem/CNCIsoFluxMod.F90
#	src/biogeochem/CNDriverMod.F90
#	src/biogeochem/CNPhenologyMod.F90
#	src/biogeochem/CNProductsMod.F90
#	src/biogeochem/CNVegCarbonFluxType.F90
#	src/biogeochem/CNVegNitrogenFluxType.F90
#	src/biogeochem/EDBGCDynMod.F90
#	src/main/clm_initializeMod.F90
#	src/main/controlMod.F90
#	src/soilbiogeochem/SoilBiogeochemDecompCascadeBGCMod.F90
samsrabin added a commit to samsrabin/CTSM that referenced this issue Dec 23, 2023
@samsrabin
Merge tag 'ctsm5.1.dev142' into tillage-mike-merge142
9cdc75a 
b4b changes to Python scripts, history lists, tech note, and clm_time_manager.

* Add system and unit tests for making fsurdat with all crops everywhere (ESCOMP#2081)
* Rework master_list* files etc. (ESCOMP#2087)
* Fixes to methane Tech Note (ESCOMP#2091)
* Add is_doy_in_interval() function (ESCOMP#2158)
* Avoid using subprocess.run() in FSURDATMODIFYCTSM (ESCOMP#2125)

Closes issues:
* Add unit test for making fsurdat with all crops everywhere (ESCOMP#2079)
* Rework master_list_(no)?fates.rst? (ESCOMP#2083)
* conda run -n can fail if a conda environment is already active (ESCOMP#2109)
* conda fails to load for SystemTests (ESCOMP#2111)
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Add system and unit tests for making fsurdat with all crops everywhere samsrabin/CTSM
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@samsrabin @slevis-lmwg