Merge pull request #1725 from NCAR/ejh_next_9

adding netCDF interation to build summary and pio_meta.h

.github/workflows/cmake_ncint.yml

@@ -1,7 +1,3 @@
-# This is the GitHub workflow file to build and test the PIO library with CMake, and netCDF integration.
-
-# Ed Hartnett 8/19/20
-
   name: cmake_ncint
 
 on:

.github/workflows/strict_autotools.yml

@@ -44,13 +44,13 @@ jobs:
 
     - name: autoreconf
       run: autoreconf -i
-    - name: configure
-      run: |
-          export CFLAGS="-std=c99  -fsanitize=address -fno-omit-frame-pointer -Werror"
-          export FFLAGS="-fsanitize=address -fno-omit-frame-pointer -Werror"
-          export FCFLAGS="-fsanitize=address -fno-omit-frame-pointer -Werror"
-          ./configure
-    - name: make -j distcheck
+    - name: build
       run: |
+        set -x
+        export CFLAGS="-std=c99 -Wall"
+        export FFLAGS="-Wall"
+        export FCFLAGS="-Wall"
         export DISTCHECK_CONFIGURE_FLAGS="--enable-fortran"
+        ./configure
         make -j distcheck
+        

CMakeLists.txt

@@ -353,6 +353,15 @@ CHECK_C_SOURCE_COMPILES("
 #endif
 int main() {return 0;}" HAVE_DISPATCH2)
 
+if (NETCDF_INTEGRATION)
+  if (NOT HAVE_DISPATCH2)
+    message (FATAL_ERROR "Need newer version of netcdf-c for netcdf integration feature, please upgrade your netCDF library")
+  endif ()
+  set(HAVE_NETCDF_INTEGRATION 1)
+else ()
+  set(HAVE_NETCDF_INTEGRATION 0)
+endif ()
+
 #####
 # Configure and print the libpio.settings file.
 #####
@@ -400,6 +409,7 @@ is_enabled(HAVE_H5Z_SZIP HAS_SZLIB)
 is_enabled(HDF5_HAS_PAR_FILTERS HAS_PAR_FILTERS)
 is_enabled(HAVE_NETCDF4 HAS_NETCDF4)
 is_enabled(HAVE_NETCDF_PAR HAS_NETCDF4_PAR)
+is_enabled(HAVE_NETCDF_INTEGRATION HAS_NETCDF_INTEGRATION)
 
 # Generate file from template.
 CONFIGURE_FILE("${CMAKE_CURRENT_SOURCE_DIR}/libpio.settings.in"

configure.ac

@@ -413,6 +413,7 @@ AX_SET_META([PIO_HAS_PNETCDF],[$enable_pnetcdf],[yes])
 AX_SET_META([PIO_HAS_PAR_FILTERS], [$have_par_filters],[yes])
 AX_SET_META([PIO_HAS_NETCDF4], [$have_netcdf4],[yes])
 AX_SET_META([PIO_HAS_NETCDF4_PAR], [$have_netcdf_par],[yes])
+AX_SET_META([PIO_HAS_NETCDF_INTEGRATION], [$enable_netcdf_integration],[yes])
 
 # Create output variables from various shell variables, for use in
 # generating libpio.settings.
@@ -430,6 +431,7 @@ AC_SUBST(HAS_SZIP_WRITE, [$have_szip_write])
 AC_SUBST([HAS_PAR_FILTERS], [$have_par_filters])
 AC_SUBST([HAS_NETCDF4], [$have_netcdf4])
 AC_SUBST([HAS_NETCDF4_PAR], [$have_netcdf_par])
+AC_SUBST([HAS_NETCDF_INTEGRATION], [$enable_netcdf_integration])
 
 # Create the build summary file. 
 AC_CONFIG_FILES([libpio.settings

libpio.settings.in

@@ -31,4 +31,5 @@ SZIP Write Support:	@HAS_SZIP_WRITE@
 Parallel Filters:	@HAS_PAR_FILTERS@
 NetCDF/HDF5 Support:	@HAS_NETCDF4@
 NetCDF/HDF5 Par I/O:	@HAS_NETCDF4_PAR@
+NetCDF Integration:	@HAS_NETCDF_INTEGRATION@
 

src/clib/pio_meta.h.in

@@ -28,5 +28,6 @@
 #define PIO_HAS_PAR_FILTERS @PIO_HAS_PAR_FILTERS@ /*!< NetCDF supports parallel I/O with filters. */
 #define PIO_HAS_NETCDF4     @PIO_HAS_NETCDF4@     /*!< NetCDF-4 supported. */
 #define PIO_HAS_NETCDF4_PAR @PIO_HAS_NETCDF4_PAR@ /*!< NetCDF-4 parallel I/O supported. */
+#define PIO_HAS_NETCDF_INTEGRATION @PIO_HAS_NETCDF_INTEGRATION@ /*!< NetCDF integration supported. */
 
 #endif

tests/cunit/test_darray_append.c

@@ -79,7 +79,6 @@ int test_darray_append(int iosysid, int ioid, int num_flavors, int *flavor, int
     int varid;     /* The ID of the netCDF varable. */
     int varid2;     /* The ID of a netCDF varable of different type. */
     int varid3;   /* the ID of a variable with no unlimited dimension. */
-    int wrong_varid = TEST_VAL_42;  /* A wrong ID. */
     int ret;       /* Return code. */
     MPI_Datatype mpi_type;
     int type_size; /* size of a variable of type pio_type */
@@ -188,9 +187,6 @@ int test_darray_append(int iosysid, int ioid, int num_flavors, int *flavor, int
 	    if (other_type && (ret = PIOc_setframe(ncid, varid2, 0)))
 		ERR(ret);
 
-	    int frame = 0;
-	    int flushtodisk = 0;
-
 	    /* These should not work. */
 	    if (PIOc_write_darray(ncid + TEST_VAL_42, varid, ioid, arraylen, test_data, fillvalue) != PIO_EBADID)
 		ERR(ERR_WRONG);