Merge branch 'rljacob/cime/fix-mpas-starchive' (PR #1334)

Allow the case.st_archive script to work with mpaso and mpascice history and restart files.

Also should work with mpasli but not tested.

From the case directory, executing ./case.st_archive should move all history and restart files to the short term archive for all ACME components.

Fixes #1305
S2-131 #close
[BFB]

* rljacob/cime/fix-mpas-starchive:
  fix mpas pattern matching so only interim restart files are deleted
  Add ability to archive MPAS land ice files
  Add ability to handle mpas files
  Change regex for mpaso and mpascice files

config/acme/config_archive.xml

@@ -81,7 +81,7 @@
 
   <comp_archive_spec compname="mpascice" compclass="ice">
     <rest_file_extension>\.rst.*</rest_file_extension>
-    <hist_file_extension>\.hist.*</hist_file_extension>
+    <hist_file_extension>\.hist.*\.*\.*\.nc</hist_file_extension>
     <rest_history_varname>unset</rest_history_varname>
     <rpointer>
       <rpointer_file>rpointer.ice</rpointer_file>
@@ -113,7 +113,7 @@
 
   <comp_archive_spec compname="mpaso" compclass="ocn">
     <rest_file_extension>\.rst.*</rest_file_extension>
-    <hist_file_extension>\.hist.*</hist_file_extension>
+    <hist_file_extension>\.hist.*\.*\.*\.nc</hist_file_extension>
     <rest_history_varname>unset</rest_history_varname>
     <rpointer>
       <rpointer_file>rpointer.ocn</rpointer_file>

scripts/lib/CIME/case_st_archive.py

@@ -149,6 +149,8 @@ def _archive_history_files(case, archive, archive_entry,
         for i in range(ninst):
             if compname == 'dart':
                 newsuffix = casename + suffix
+            elif compname.find('mpas') == 0:
+                newsuffix = compname + '.*' + suffix
             else:
                 if ninst_string:
                     newsuffix = casename + '.' + compname + ".*" + ninst_string[i] + suffix
@@ -230,22 +232,27 @@ def _archive_restarts(case, archive, archive_entry,
     for suffix in archive.get_rest_file_extensions(archive_entry):
         for i in range(ninst):
             restfiles = ""
-            pattern = r"%s\.%s\d*.*" % (casename, compname)
-            if pattern != "dart":
+            if compname.find("mpas") == 0:
+                pattern = compname + suffix + '_'.join(datename.rsplit('-', 1))
                 pfile = re.compile(pattern)
-                files = [f for f in os.listdir(rundir) if pfile.search(f)]
-                if ninst_strings:
-                    pattern = ninst_strings[i] + suffix + datename
+                restfiles = [f for f in os.listdir(rundir) if pfile.search(f)]
+            else:
+                pattern = r"%s\.%s\d*.*" % (casename, compname)
+                if pattern != "dart":
                     pfile = re.compile(pattern)
-                    restfiles = [f for f in files if pfile.search(f)]
+                    files = [f for f in os.listdir(rundir) if pfile.search(f)]
+                    if ninst_strings:
+                        pattern = ninst_strings[i] + suffix + datename
+                        pfile = re.compile(pattern)
+                        restfiles = [f for f in files if pfile.search(f)]
+                    else:
+                        pattern = suffix + datename
+                        pfile = re.compile(pattern)
+                        restfiles = [f for f in files if pfile.search(f)]
                 else:
-                    pattern = suffix + datename
+                    pattern = suffix
                     pfile = re.compile(pattern)
-                    restfiles = [f for f in files if pfile.search(f)]
-            else:
-                pattern = suffix
-                pfile = re.compile(pattern)
-                restfiles = [f for f in os.listdir(rundir) if pfile.search(f)]
+                    restfiles = [f for f in os.listdir(rundir) if pfile.search(f)]
 
             for restfile in restfiles:
                 restfile = os.path.basename(restfile)