Merge pull request #1722 from NCAR/ejh_next_7

cleanup of flag use in src/flib
ESMCI · Aug 18, 2020 · a59a55b · a59a55b
2 parents 4f80a53 + a1a04ef
commit a59a55b
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Showing 41 changed files with 55 additions and 40 deletions.
diff --git a/Makefile.am b/Makefile.am
@@ -14,5 +14,5 @@ endif
 SUBDIRS = src tests examples ${DOC} scripts cmake
 
 # Add these files to the distribution.
-EXTRA_DIST = CMakeLists.txt set_flags.am COPYRIGHT cmake_config.h.in	\
+EXTRA_DIST = CMakeLists.txt COPYRIGHT cmake_config.h.in	\
 libpio.settings.in
diff --git a/cmake_config.h.in b/cmake_config.h.in
@@ -32,4 +32,9 @@
 
 #define HAVE_PAR_FILTERS @HAVE_PAR_FILTERS@
 
+#cmakedefine HAVE_PAR_FILTERS
+#cmakedefine NETCDF_INTEGRATION
+#cmakedefine _NETCDF4
+#cmakedefine _PNETCDF
+
 #endif /* _PIO_CONFIG_ */
diff --git a/examples/f03/CMakeLists.txt b/examples/f03/CMakeLists.txt
@@ -15,6 +15,6 @@ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g -O0")
 if(${PIO_BUILD_TIMING})
   SET(TIMING_LINK_LIB timing)
 endif()
-SET(SRC examplePio.f90)
+SET(SRC examplePio.F90)
 ADD_EXECUTABLE(examplePio_f90 ${SRC})
 TARGET_LINK_LIBRARIES(examplePio_f90 piof pioc ${TIMING_LINK_LIB})
diff --git a/examples/f03/Makefile.am b/examples/f03/Makefile.am
@@ -3,8 +3,8 @@
 
 # Ed Hartnett 7/17/19
 
-# Put together AM_CPPFLAGS and AM_LDFLAGS.
-include $(top_srcdir)/set_flags.am
+# Find the pio.mod file.
+AM_CPPFLAGS = -I$(top_srcdir)/src/flib
 
 AM_FCFLAGS = -I$(top_srcdir)/src/flib
 
@@ -14,7 +14,7 @@ ${top_builddir}/src/clib/libpioc.la
 # Build the test for make check.
 check_PROGRAMS = examplePio
 
-examplePio_SOURCES = examplePio.f90
+examplePio_SOURCES = examplePio.F90
 
 if RUN_TESTS
 # Tests will run from a bash script.

diff --git a/examples/f03/examplePio.f90 → examples/f03/examplePio.F90 b/examples/f03/examplePio.f90 → examples/f03/examplePio.F90
@@ -1,3 +1,4 @@
+#include "config.h"
 !> @file
 !! A simple Fortran example for the ParallelIO Library.
 module pioExample

diff --git a/set_flags.am b/set_flags.am
diff --git a/src/flib/Makefile.am b/src/flib/Makefile.am
@@ -7,8 +7,6 @@
 # The library we are building.
 lib_LTLIBRARIES = libpiof.la
 
-AM_CPPFLAGS = -D_NETCDF4 -D_PNETCDF
-
 # These linker flags specify libtool version info.
 # See http://www.gnu.org/software/libtool/manual/libtool.html#Libtool-versioning
 # for information regarding incrementing `-version-info`.
@@ -97,15 +95,15 @@ if BUILD_DOCS
 BUILT_SOURCES += piodarray.f90 piolib_mod.f90 pionfatt_mod.f90 pionfget_mod.f90 \
 pionfput_mod.f90 pionfatt_mod_2.f90 pionfget_mod_2.f90
 piodarray.f90: piodarray.F90
-	$(CC) -E $< > $@
+	$(CC) -I../.. $(AM_CPPFLAGS) -E $< > $@
 piolib_mod.f90: piolib_mod.F90
 	$(CC) -I../.. $(AM_CPPFLAGS) -E $< > $@
 pionfatt_mod.f90: pionfatt_mod.F90
-	$(CC) -E $< > $@
+	$(CC) -I../.. $(AM_CPPFLAGS) -E $< > $@
 pionfget_mod.f90: pionfget_mod.F90
-	$(CC) -E $< > $@
+	$(CC) -I../.. $(AM_CPPFLAGS) -E $< > $@
 pionfput_mod.f90: pionfput_mod.F90
-	$(CC) -E $< > $@
+	$(CC) -I../.. $(AM_CPPFLAGS) -E $< > $@
 
 # Unfortunately the genf90.pl script which generates these fortran
 # files has no way of handling doxygen documentation. So use sed to

diff --git a/src/flib/pio_kinds.F90 b/src/flib/pio_kinds.F90
@@ -4,6 +4,7 @@
 !! types like integer, character, logical, real4 and real8.
 !!
 !<
+#include "config.h"
  module pio_kinds
 
 !  uses mpi if available

diff --git a/src/flib/pio_nf.F90 b/src/flib/pio_nf.F90
@@ -1,3 +1,4 @@
+#include "config.h"
 !>
 !! @file
 !! Code to implement the classic netCDF Fortran API in PIO.

diff --git a/src/flib/pio_support.F90 b/src/flib/pio_support.F90
@@ -1,3 +1,4 @@
+#include "config.h"
 !>
 !! @file
 !! Internal code for compiler workarounds, aborts and debug functions.

diff --git a/src/flib/pio_types.F90 b/src/flib/pio_types.F90
@@ -1,3 +1,4 @@
+#include "config.h"
 !>
 !! @file
 !! Derived datatypes and constants for PIO Fortran API.

diff --git a/src/flib/piodarray.F90.in b/src/flib/piodarray.F90.in
@@ -1,4 +1,5 @@
 #define __PIO_FILE__ 'piodarray'
+#include "config.h"
 !>
 !! @file
 !! Read and write routines for decomposed data.

diff --git a/src/flib/pionfatt_mod.F90.in b/src/flib/pionfatt_mod.F90.in
@@ -1,4 +1,5 @@
 #define __PIO_FILE__ "pionfatt_mod.F90"
+#include "config.h"
 !>
 !! @file
 !! @brief NetCDF attribute interface to PIO

diff --git a/src/flib/pionfget_mod.F90.in b/src/flib/pionfget_mod.F90.in
@@ -1,4 +1,5 @@
 #define __PIO_FILE__ "pionfget_mod.F90"
+#include "config.h"
 !>
 !! @file
 !! @brief Read Routines for non-decomposed NetCDF data.

diff --git a/src/flib/pionfput_mod.F90.in b/src/flib/pionfput_mod.F90.in
@@ -1,4 +1,5 @@
 #define __PIO_FILE__ "pionfput_mod.F90"
+#include "config.h"
 !>
 !! @file
 !! @brief Write routines for non-decomposed NetCDF data.

diff --git a/tests/cunit/test_darray_frame.c b/tests/cunit/test_darray_frame.c
@@ -192,7 +192,7 @@ int main(int argc, char **argv)
 
     /* Initialize test. */
     if ((ret = pio_test_init2(argc, argv, &my_rank, &ntasks, MIN_NTASKS,
-                              MIN_NTASKS, 3, &test_comm)))
+                              MIN_NTASKS, -1, &test_comm)))
         ERR(ERR_INIT);
 
     if ((ret = PIOc_set_iosystem_error_handling(PIO_DEFAULT, PIO_RETURN_ERROR, NULL)))

diff --git a/tests/fncint/Makefile.am b/tests/fncint/Makefile.am
@@ -3,8 +3,8 @@
 
 # Ed Hartnett 7/3/19
 
-# Put together AM_CPPFLAGS and AM_LDFLAGS.
-include $(top_srcdir)/set_flags.am
+# Find the pio.mod file.
+AM_CPPFLAGS = -I$(top_srcdir)/src/flib
 
 # Link to the PIO Fortran and C libraries.
 LDADD = ${top_builddir}/src/flib/libpiof.la ${top_builddir}/src/clib/libpioc.la

diff --git a/tests/general/Makefile.am b/tests/general/Makefile.am
@@ -6,11 +6,11 @@
 # Parallel builds don't currently work in this directory.
 .NOTPARALLEL:
 
-# Put together AM_CPPFLAGS and AM_LDFLAGS.
-include $(top_srcdir)/set_flags.am
+# Find the pio.mod file.
+AM_CPPFLAGS = -I$(top_srcdir)/src/flib
 
-LDADD = libpio_tutil.la	\
-${top_builddir}/src/flib/libpiof.la		\
+# Link to our test, fortran, and C libraries.
+LDADD = libpio_tutil.la ${top_builddir}/src/flib/libpiof.la	\
 ${top_builddir}/src/clib/libpioc.la
 
 # There is a test utility mod file in this subdir which must be built.

diff --git a/tests/general/ncdf_fail.F90.in b/tests/general/ncdf_fail.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 MODULE ncdf_fail_tgv
   use pio_tutil
   implicit none

diff --git a/tests/general/ncdf_get_put.F90.in b/tests/general/ncdf_get_put.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 PIO_TF_TEMPLATE<PIO_TF_PREDEF_TYPENAME PIO_TF_DATA_TYPE, PIO_TF_PREDEF_TYPENAME PIO_TF_FC_DATA_TYPE>
 PIO_TF_AUTO_TEST_SUB_BEGIN test_put_1datt
   Implicit none

diff --git a/tests/general/ncdf_inq.F90.in b/tests/general/ncdf_inq.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 MODULE ncdf_inq_tests_tgv
   use pio_tutil
   character(len=PIO_TF_MAX_STR_LEN), parameter :: tgv_fname = "pio_ncdf_inq_test_file.nc"

diff --git a/tests/general/ncdf_simple_tests.F90.in b/tests/general/ncdf_simple_tests.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 MODULE ncdf_simple_tests_tgv
   use pio_tutil
   ! tgv in prefix corresponds to module name (ncdf_simple_tests_tgv)

diff --git a/tests/general/pio_decomp_fillval.F90.in b/tests/general/pio_decomp_fillval.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! nc write 1d array with fillvalues (the holes are explicitly specified)
 PIO_TF_TEMPLATE<PIO_TF_PREDEF_TYPENAME PIO_TF_DATA_TYPE, PIO_TF_PREDEF_TYPENAME PIO_TF_FC_DATA_TYPE>
 PIO_TF_AUTO_TEST_SUB_BEGIN nc_write_1d_explicit_fval

diff --git a/tests/general/pio_decomp_frame_tests.F90.in b/tests/general/pio_decomp_frame_tests.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Get a 3D column decomposition
 ! If force_rearrange is FALSE, the decomposition is such that
 ! # All even procs have VEC_HGT_SZ blocks of 

diff --git a/tests/general/pio_decomp_tests.F90.in b/tests/general/pio_decomp_tests.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 PIO_TF_AUTO_TEST_SUB_BEGIN init_decomp_1d_get_loc_sz
   implicit none
   integer, parameter :: VEC_LOCAL_SZ = 7

diff --git a/tests/general/pio_decomp_tests_1d.F90.in b/tests/general/pio_decomp_tests_1d.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Get a block cyclic decomposition
 ! If force_rearrange is FALSE, the decomposition is such that
 ! # All even procs have VEC_LOCAL_SZ elements

diff --git a/tests/general/pio_decomp_tests_2d.F90.in b/tests/general/pio_decomp_tests_2d.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Get a 2D column decomposition
 ! If force_rearrange is FALSE, the decomposition is such that
 ! # All even procs have VEC_COL_SZ rows of VEC_ROW_SZ elements

diff --git a/tests/general/pio_decomp_tests_3d.F90.in b/tests/general/pio_decomp_tests_3d.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Get a 3D column decomposition
 ! If force_rearrange is FALSE, the decomposition is such that
 ! # All even procs have VEC_HGT_SZ blocks of 

diff --git a/tests/general/pio_fail.F90.in b/tests/general/pio_fail.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 PIO_TF_AUTO_TEST_SUB_BEGIN fail_rank_even
   LOGICAL cond
   ! Even procs fail

diff --git a/tests/general/pio_file_fail.F90.in b/tests/general/pio_file_fail.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 PIO_TF_TEST_SUB_BEGIN create_file_always_fail(iotype, filename)
   implicit none
   integer,  intent(in)  :: iotype

diff --git a/tests/general/pio_file_simple_tests.F90.in b/tests/general/pio_file_simple_tests.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 PIO_TF_TEST_SUB_BEGIN create_file_no_opts(iotype, filename)
   implicit none
   integer,  intent(in)  :: iotype

diff --git a/tests/general/pio_init_finalize.F90.in b/tests/general/pio_init_finalize.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 PIO_TF_AUTO_TEST_SUB_BEGIN init_finalize
   ! The default test driver should initialize and finalize PIO
   PRINT *, "Hello world"

diff --git a/tests/general/pio_iosystem_tests.F90.in b/tests/general/pio_iosystem_tests.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Split comm world into two comms (one with even procs and the other
 ! with odd procs
 SUBROUTINE split_world_odd_even(new_comm, new_rank, new_size, is_even)

diff --git a/tests/general/pio_iosystem_tests2.F90.in b/tests/general/pio_iosystem_tests2.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Split comm world into two comms (one with even procs and the other
 ! with odd procs
 SUBROUTINE split_world_odd_even(new_comm, new_rank, new_size, is_even)

diff --git a/tests/general/pio_iosystem_tests3.F90.in b/tests/general/pio_iosystem_tests3.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Split comm world into two comms (even procs and odd procs) and
 ! rank == overlapped_rank included in both comms
 SUBROUTINE split_world_two_with_overlap(new_comms, new_ranks, new_sizes, overlapped_rank)

diff --git a/tests/general/pio_rearr.F90.in b/tests/general/pio_rearr.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 ! Create a file with a global attribute (filename)
 SUBROUTINE create_file(comm, iosys, iotype, fname, attname, dimname, ret)
     use pio_tutil

diff --git a/tests/general/pio_rearr_opts.F90.in b/tests/general/pio_rearr_opts.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 MODULE pio_rearr_opts_tgv
   use pio_tutil
   character(len=PIO_TF_MAX_STR_LEN), parameter ::tgv_fname ="pio_rearr_opts_test.nc"

diff --git a/tests/general/pio_rearr_opts2.F90.in b/tests/general/pio_rearr_opts2.F90.in
@@ -1,3 +1,4 @@
+#include "config.h"
 MODULE pio_rearr_opts_tgv
   use pio_tutil
   character(len=PIO_TF_MAX_STR_LEN), parameter ::tgv_fname ="pio_rearr_opts2_test.nc"

diff --git a/tests/performance/Makefile.am b/tests/performance/Makefile.am
@@ -6,8 +6,8 @@
 # Parallel builds don't currently work in this directory.
 .NOTPARALLEL:
 
-# Put together AM_CPPFLAGS and AM_LDFLAGS.
-include $(top_srcdir)/set_flags.am
+# Find the pio.mod file.
+AM_CPPFLAGS = -I$(top_srcdir)/src/flib
 
 # Link to test util library and PIO Fortran and C libs.
 LDADD = $(top_builddir)/src/gptl/libperf_mod.la	\

diff --git a/tests/performance/pioperformance.F90 b/tests/performance/pioperformance.F90
@@ -1,3 +1,4 @@
+#include "config.h"
 #define VARINT 1
 !#define VARREAL 1
 !#define VARDOUBLE 1

diff --git a/tests/unit/Makefile.am b/tests/unit/Makefile.am
@@ -6,8 +6,8 @@
 # Parallel builds don't currently work in this directory.
 .NOTPARALLEL:
 
-# Put together AM_CPPFLAGS and AM_LDFLAGS.
-include $(top_srcdir)/set_flags.am
+# Find the pio.mod file.
+AM_CPPFLAGS = -I$(top_srcdir)/src/flib
 
 # Build the test for make check.
 check_PROGRAMS = pio_unit_test_driver