clair3 defaults #102
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| name: CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| Testing: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: webfactory/ssh-agent@v0.5.4 | |
| with: | |
| ssh-private-key: ${{ secrets.SSH_PRIVATE_KEY }} | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| - run: make | |
| #- name: build application | |
| - name: Test workflow | |
| uses: snakemake/snakemake-github-action@v1.23.0 | |
| with: | |
| directory: . | |
| snakefile: workflow/Snakefile | |
| args: "--use-conda --cores 6 --configfile .test/config.yaml" |