mosaic

EichlerLab · Nov 17, 2023 · 2b7fe05 · 2b7fe05
1 parent 6acbf14
commit 2b7fe05
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/somatic_variants.smk b/workflow/rules/somatic_variants.smk
@@ -84,7 +84,7 @@ rule sniffles_somatic:
     threads: 1
     shell:
         """
-        sniffles --somatic -i {input.merged_bam} --reference {input.ref} --output-rnames -v {output.vcf}
+        sniffles --mosaic -i {input.merged_bam} --reference {input.ref} --output-rnames -v {output.vcf}
         """