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Enable datacheck Jira ticket CSV output #871

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Description

This PR makes it possible for the datacheck Jira ticket script to generate a CSV file containing datacheck ticket data, which can then be imported to Jira to create those tickets.

It provides a fallback method of creating Jira tickets in the event that other methods are unavailable.

Related JIRA tickets:

Overview of changes

  • Parameters csv_mode and merge_ticket_key are implemented in runnable CreateDCJiraTickets.
  • Parameters -csv and -merge_ticket_key are implemented in script create_datacheck_tickets.pl.
  • Runnable CreateDCJiraTickets dies without retrying where previously it issued a warning.

Testing

The updated CreateDCJiraTickets runnable and create_datacheck_tickets.pl script were used to generate a set of datacheck Jira ticket CSV files for Plants release 114 datachecks.


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codecov bot commented Oct 27, 2024

Codecov Report

Attention: Patch coverage is 40.00000% with 3 lines in your changes missing coverage. Please review.

Project coverage is 60.70%. Comparing base (78ab7e1) to head (8c866dd).
Report is 15 commits behind head on release/114.

Files with missing lines Patch % Lines
.../EnsEMBL/Compara/RunnableDB/CreateDCJiraTickets.pm 40.00% 0 Missing and 3 partials ⚠️
Additional details and impacted files
@@               Coverage Diff               @@
##           release/114     #871      +/-   ##
===============================================
+ Coverage        60.37%   60.70%   +0.32%     
===============================================
  Files              197      212      +15     
  Lines            22452    23019     +567     
  Branches          3627     3629       +2     
===============================================
+ Hits             13556    13973     +417     
- Misses            7680     7827     +147     
- Partials          1216     1219       +3     

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