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Hotfix/xref TSV dump #840

Merged
merged 2 commits into from
Nov 6, 2023
Merged

Hotfix/xref TSV dump #840

merged 2 commits into from
Nov 6, 2023

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sgiorgetti
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Description

The append method of Path::Tiny assumes data are provided as a whole: it therefore opens, writes out and closes the file.
Used in a loop, this method opens and closes the underlying file every time. This is not desireable for many reasons.
Some exception checking are also added.

Use case

The pipeline analysis "Xref_TSV" takes forever to run and may also fails - especially on SLURM.

Benefits

Enhanced performance. Better use of the FS.

Possible Drawbacks

None.

Testing

Test suite runs fine

Dependencies

None

@marcoooo marcoooo merged commit 3236a1f into main Nov 6, 2023
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@sgiorgetti sgiorgetti mentioned this pull request Nov 6, 2023
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2 participants