Skip to content

Issues: Ensembl/ensembl-vep

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

54 Open 1,056 Closed
54 Open 1,056 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Annotation fails randomly with structural variants coming from Manta
#1800 opened Nov 20, 2024 by fperezcobos
@olaaustine
6
Indel Annotation Problem with Uploaded Variation Column
#1799 opened Nov 20, 2024 by hkirmak
@dglemos
9
Incorrect Annotation for Frameshift Variant in VEP 113 bug
#1796 opened Nov 19, 2024 by GSYongWu
@olaaustine
7
Annotation Discrepancy for Variant 1:98348885_G>A in VEP 113
#1793 opened Nov 18, 2024 by GSYongWu
@dglemos
4
Homo_sapiens.GRCh38.dna.toplevel.fa.gz.fai file not updated in release 113
#1792 opened Nov 15, 2024 by rklocke
@jamie-m-a
vep can't find index file
#1791 opened Nov 14, 2024 by jerrypgreenberg
@jamie-m-a
3
Missing annotation of intergenic region, --distance doesn't help
#1790 opened Nov 13, 2024 by dshafranskaya
@jamie-m-a
VEP 113 Interrupts on Large VCF Files with Numerous Transcript-assembly Mismatch Warnings
#1787 opened Nov 11, 2024 by GSYongWu
@dglemos
3
No protein version from overlap/id/:id end point results
#1786 opened Nov 8, 2024 by XLIU-hub
@nakib103
1
Issue with Adding Custom BED File to Ensembl VEP as a Coverage Database
#1785 opened Nov 7, 2024 by mrymkdnz
@nakib103
1
VEP needs sorted VCFs again
#1784 opened Nov 5, 2024 by gernophil
@nakib103
1
Unable to Locate PolyPhen and SIFT SQLite Files for CHM13 Genome
#1783 opened Nov 5, 2024 by LuyaoRen
@nakib103
1
Multiple CSQ fields when re-annotating a VCF with --keep_csq
#1780 opened Oct 29, 2024 by TimD1
@dglemos
1
ONE-BASED REFERENCE
#1779 opened Oct 25, 2024 by vappiah
@likhitha-surapaneni
1
MSG: The coordinate interval for display is of different length than for the reference allele
#1775 opened Oct 22, 2024 by suzyhh
@likhitha-surapaneni
7
Missing annotations for BND variants.
#1774 opened Oct 22, 2024 by ramprasadn
@likhitha-surapaneni
2
checksum for <genome> doesn't match checksum in CHECKSUMS file on FTP site
#1771 opened Oct 18, 2024 by amizeranschi
@likhitha-surapaneni
2
Optimize WGS VCF File Annotation for Improved Performance and Speed
#1769 opened Oct 18, 2024 by Ananya-swi
@jamie-m-a
7
How can I use my own fasta and gff to annotate?
#1768 opened Oct 15, 2024 by DayTimeMouse
@jamie-m-a
1
MSG: ERROR: No such operator "D"
#1767 opened Oct 11, 2024 by BenjaminDEMAILLE
@jamie-m-a
1
substr outside of string in VariationEffect.pm line 1329
#1764 opened Oct 9, 2024 by bartgrantham
@dglemos
5
Inconsistent HGNC:ID results between single-thread and multi-thread in vep
#1759 opened Sep 26, 2024 by karlestira
@likhitha-surapaneni
6
Can not find .index file for FASTA file bug
#1755 opened Sep 18, 2024 by kuaileshizuihao
@likhitha-surapaneni
4
gnomADe annotation not presented for a variant
#1754 opened Sep 13, 2024 by Aisha-D
@dglemos
4
High memory usage due to 368 BRCA1 RefSeq transcripts - Transcript blocklist / allowlists or option for max transcripts enhancement
#1732 opened Aug 1, 2024 by davmlaw
@nakib103
3
ProTip! Exclude everything labeled bug with -label:bug.