release/94.3

GFF custom annotation: use MD5 as record ID if there is no 'Name' nor 'ID' in the record

release/94.2

Add an additional check on chromosome names for the custom files with chromosome notation like 'chr1'

release/93.7

Add an additional check on chromosome names for the custom files with chromosome notation like 'chr1'

release/94.1

Fixing a couple of issues regarding the filtering of VEP results

release/93.6

Fixing a couple of issues regarding the filtering of VEP results

release/94.0

• RefSeq transcript version updated.
• When the input data format is not specified on the command line, VEP attempts to detect it. The assumed format is now reported in verbose mode (--verbose).
• VEP assigns assigned the consequence types TF_binding_site_variant, TFBS_ablation, TFBS_fusion, TFBS_amplification and TFBS_translocation to human and mouse variants which overlapped motif features. These annotations will not be available in VEP caches for human in release 94 so must be added as a custom annotation.

release/93.5

Fix issue when a custom annotation file doesn't have data on the chromosome of the processed variant

release/93.4

Fix issue with some Perl versions where the gene symbol NANS is being treated as a number.

release/93.2

• Fix missing population frequency when the flag --filter_common is used
• Replace the default value of the FREQS column to NA when the population allele frequency is not found or not available

release/93.1

• Fix vep_filter for VCF input files where is no VEP annotation available
• Fix installation of the VEP_plugins when the external VEP plugins are downloaded via FTP site