Releases: Ensembl/ensembl-vep
Releases · Ensembl/ensembl-vep
release/94.3
GFF custom annotation: use MD5 as record ID if there is no 'Name' nor 'ID' in the record
release/94.2
Add an additional check on chromosome names for the custom files with chromosome notation like 'chr1'
release/93.7
Add an additional check on chromosome names for the custom files with chromosome notation like 'chr1'
release/94.1
Fixing a couple of issues regarding the filtering of VEP results
release/93.6
Fixing a couple of issues regarding the filtering of VEP results
release/94.0
- RefSeq transcript version updated.
- When the input data format is not specified on the command line, VEP attempts to detect it. The assumed format is now reported in verbose mode (--verbose).
- VEP assigns assigned the consequence types TF_binding_site_variant, TFBS_ablation, TFBS_fusion, TFBS_amplification and TFBS_translocation to human and mouse variants which overlapped motif features. These annotations will not be available in VEP caches for human in release 94 so must be added as a custom annotation.
release/93.5
Fix issue when a custom annotation file doesn't have data on the chromosome of the processed variant
release/93.4
Fix issue with some Perl versions where the gene symbol NANS is being treated as a number.
release/93.2
- Fix missing population frequency when the flag
--filter_common
is used - Replace the default value of the
FREQS
column toNA
when the population allele frequency is not found or not available
release/93.1
- Fix
vep_filter
for VCF input files where is no VEP annotation available - Fix installation of the
VEP_plugins
when the external VEP plugins are downloaded via FTP site