Merge pull request #530 from HyunjunA/logoandothers

Logoandothers

README.md

@@ -1,35 +1,35 @@
-[![Logo](./docs/source/_static/logo_blank_small.png)]()
+<!-- [![Logo](./docs/source/_static/logo_blank_small.png)]() -->
+
+[![Logo](./docs/source/_static/aliro_brain_logo.png)]()
 
 [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://github.com/EpistasisLab/Aliro/blob/master/LICENSE)
 [![Aliro CI/CD](https://github.com/EpistasisLab/Aliro/actions/workflows/aliro_tests.yml/badge.svg)](https://github.com/EpistasisLab/Aliro/actions/workflows/aliro_tests.yml)
 [![Coverage Status](https://coveralls.io/repos/github/EpistasisLab/Aliro/badge.svg)](https://coveralls.io/github/EpistasisLab/Aliro)
 [![Downloads](https://img.shields.io/github/downloads/EpistasisLab/Aliro/total)](https://github.com/EpistasisLab/Aliro/releases)
 [![Latest Downloads](https://img.shields.io/github/downloads/EpistasisLab/Aliro/latest/total?sort=semver)](https://github.com/EpistasisLab/Aliro/releases)
 
-Aliro: AI-Driven Data Science
-==================================
+# Aliro: AI-Driven Data Science
 
 **Aliro** is an easy-to-use data science assistant.
-It allows researchers without machine learning or coding expertise to run supervised machine learning analysis through a clean web interface. 
-It provides results visualization and reproducible scripts so that the analysis can be taken anywhere. 
-And, it has an *AI* assistant that can choose the analysis to run for you.   Dataset profiles are generated and added to a knowledgebase as experiments are run, and the AI assistant learns from this to give more informed recommendations as it is used.   Aliro comes with an initial knowledgebase generated from the [PMLB benchmark suite](https://github.com/EpistasisLab/penn-ml-benchmarks).
+It allows researchers without machine learning or coding expertise to run supervised machine learning analysis through a clean web interface.
+It provides results visualization and reproducible scripts so that the analysis can be taken anywhere.
+And, it has an _AI_ assistant that can choose the analysis to run for you. Dataset profiles are generated and added to a knowledgebase as experiments are run, and the AI assistant learns from this to give more informed recommendations as it is used. Aliro comes with an initial knowledgebase generated from the [PMLB benchmark suite](https://github.com/EpistasisLab/penn-ml-benchmarks).
 
-[**Documentation**](https://epistasislab.github.io/Aliro/) 
+[**Documentation**](https://epistasislab.github.io/Aliro/)
 
 [**Latest Production Release**](https://github.com/EpistasisLab/Aliro/releases/latest)
 
 Browse the repo:
- - [User Guide](./docs/guides/userGuide.md)
- - [Developer Guide](./docs/guides/developerGuide.md) 
 
-About the Project
-=================
+- [User Guide](./docs/guides/userGuide.md)
+- [Developer Guide](./docs/guides/developerGuide.md)
+
+# About the Project
 
 Aliro is actively developed by the Center for Artificial Intelligence Research (CAIR) in the [Department of Computational Biomedicine](https://www.cedars-sinai.edu/research/departments-institutes/computational-biomedicine.html) at [Cedars-Sinai Medical Center](https://www.cedars-sinai.org/) in Los Angeles.
 Contributors include Hyunjun Choi, Miguel Hernandez, Nick Matsumoto, Jay Moran, Paul Wang, and Jason Moore (PI).
 
-Cite
-====
+# Cite
 
 An up-to-date paper describing AI methodology is available in [Bioinformatics](https://doi.org/10.1093/bioinformatics/btaa698) and [arxiv](http://arxiv.org/abs/1905.09205).
 Here's the biblatex:

docs/source/conf.py

@@ -90,7 +90,7 @@
 # You can specify multiple suffix as a list of string:
 #
 source_suffix = ['.rst', '.md']
-#source_suffix = '.rst'
+# source_suffix = '.rst'
 
 # The master toctree document.
 master_doc = 'index'
@@ -140,8 +140,11 @@
 # html_sidebars = {}
 
 # favicon path
-html_favicon = '_static/logo_blank_small.png'
-html_logo = '_static/logo_blank_small.png'
+# html_favicon = '_static/logo_blank_small.png'
+# html_logo = '_static/logo_blank_small.png'
+
+html_favicon = '_static/aliro_brain_logo.png'
+html_logo = '_static/aliro_brain_logo.png'
 
 # -- Options for HTMLHelp output ---------------------------------------------
 

raspberrypi/Aliro.desktop

@@ -4,4 +4,4 @@ Encoding=UTF-8
 Name=Aliro
 Type=Link
 URL=/home/aliro/target/production/Alrio-rpi-0.18/web/Aliro.html
-Icon=/home/aliro/target/production/Aliro-rpi-0.18/web/logo_blank_small.png
+Icon=/home/aliro/target/production/Aliro-rpi-0.18/web/aliro_brain_logo.png