Merge pull request #564 from jay-m-dev/pep8_tabs

tabs to spaces and file headers
EpistasisLab · Jan 20, 2023 · f94f33b · f94f33b
2 parents f07157d + 16c7b49
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diff --git a/ai/__init__.py b/ai/__init__.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/ai.py b/ai/ai.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/api_utils.py b/ai/api_utils.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/knowledgebase_utils.py b/ai/knowledgebase_utils.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metalearning/__init__.py b/ai/metalearning/__init__.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metalearning/dataset_describe.py b/ai/metalearning/dataset_describe.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metalearning/export_to_mongo.py b/ai/metalearning/export_to_mongo.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metalearning/get_metafeatures.py b/ai/metalearning/get_metafeatures.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metalearning/make_meta_ml_dataset.py b/ai/metalearning/make_meta_ml_dataset.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metalearning/tests/test_dataset_describe.py b/ai/metalearning/tests/test_dataset_describe.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metalearning/tests/test_get_metafeatures.py b/ai/metalearning/tests/test_get_metafeatures.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/metrics.py b/ai/metrics.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/q_utils.py b/ai/q_utils.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/recommender/__init__.py b/ai/recommender/__init__.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/recommender/average_recommender.py b/ai/recommender/average_recommender.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/recommender/base.py b/ai/recommender/base.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/recommender/knn_meta_recommender.py b/ai/recommender/knn_meta_recommender.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/recommender/random_recommender.py b/ai/recommender/random_recommender.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/recommender/surprise_recommenders.py b/ai/recommender/surprise_recommenders.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/request_manager.py b/ai/request_manager.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/sklearn/__init__.py b/ai/sklearn/__init__.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/sklearn/config/__init__.py b/ai/sklearn/config/__init__.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/sklearn/config/classifiers.py b/ai/sklearn/config/classifiers.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/sklearn/config/regressors.py b/ai/sklearn/config/regressors.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/sklearn/pennai_sklearn.py b/ai/sklearn/pennai_sklearn.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)

diff --git a/ai/tests/lab_api_mocker.py b/ai/tests/lab_api_mocker.py
@@ -1,9 +1,12 @@
 """~This file is part of the Aliro library~
 
-Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
+Copyright (C) 2023 Epistasis Lab, 
+Center for Artificial Intelligence Research and Education (CAIRE),
+Department of Computational Biomedicine (CBM),
+Cedars-Sinai Medical Center.
 
 Aliro is maintained by:
-    - Jun Choi (hyunjun.choi@cshs.org)
+    - Hyunjun Choi (hyunjun.choi@cshs.org)
     - Miguel Hernandez (miguel.e.hernandez@cshs.org)
     - Nick Matsumoto (nicholas.matsumoto@cshs.org)
     - Jay Moran (jay.moran@cshs.org)