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Add support for running PennAI on Raspberry Pi #305

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merged 151 commits into from
Aug 23, 2022
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7e11806
Add new dockerfiles for raspberry pi
JDRomano2 Jan 15, 2021
72174b7
add coveralls
Jan 15, 2021
4c56e10
Create new docker compose configuration for rpi
JDRomano2 Jan 15, 2021
bde6cb5
Add rpi dependency wheels as a Git submodule
JDRomano2 Jan 15, 2021
e9f7da9
Make Dockerfiles for rpi see wheel files
JDRomano2 Jan 15, 2021
add2dd7
Revert machine Dockerfile_production after accidental change
JDRomano2 Jan 15, 2021
e5cadd4
Builds all docker containers
JDRomano2 Jan 16, 2021
611f55e
Create mongodb data directory in dbmongo container if it doesn't exist
JDRomano2 Jan 16, 2021
ca2a305
edit coveragerc
Jan 20, 2021
f4efeba
edit env
Jan 20, 2021
90cdfcc
edit coveragerc again
Jan 20, 2021
1133216
edit github action again
Jan 20, 2021
e543d26
add relative_files = True
Jan 20, 2021
37f88fe
Bump socket.io from 2.3.0 to 2.4.0 in /lab
dependabot[bot] Jan 21, 2021
af6c275
Jenkins CI cleanup
hjwilli Jan 21, 2021
1be9c78
Merge pull request #307 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jan 21, 2021
f431523
Bump machine (rpi) to buster to fix arm64 glibc distribution
JDRomano2 Jan 24, 2021
ed25cd6
Improve naming convention for RPi dockerfiles and create RPi test doc…
JDRomano2 Jan 24, 2021
b63c2f5
Make new test docker-compose files point to the right Dockerfiles
JDRomano2 Jan 24, 2021
6157f68
Pass all unit tests on Raspberry Pi
JDRomano2 Jan 25, 2021
aa38f6d
new workflow
Jan 28, 2021
e31cc20
new workflow fix
Jan 28, 2021
10527e5
Update .coveragerc
weixuanfu Jan 28, 2021
945fe3c
use numpy 1.19.5 instead
Feb 5, 2021
1066b62
Merge branch 'coveralls' of github.com:EpistasisLab/pennai into cover…
Feb 5, 2021
13093d4
updates requirements and fixes fn signature changes to new surprise v…
lacava Feb 19, 2021
53bd296
removes separate call to surprise
lacava Feb 19, 2021
fc14910
removes extra surprise mentions
lacava Feb 19, 2021
68cc89b
unit test refactor
hjwilli Feb 19, 2021
ada1b2f
Merge pull request #310 from EpistasisLab/coveralls
hjwilli Feb 19, 2021
9305093
Merge branch 'master' into unit_test_runner_refactor
hjwilli Feb 19, 2021
984422d
Update pennai_tests.yml
hjwilli Feb 19, 2021
3160a0e
Merge branch 'master' into unit_test_runner_refactor
hjwilli Feb 19, 2021
352f8b8
Update README.md
hjwilli Feb 19, 2021
257dce1
github actions unit testing
hjwilli Feb 19, 2021
b2c1627
Update pennai_tests.yml
hjwilli Feb 19, 2021
4b237de
Merge pull request #314 from EpistasisLab/unit_test_runner_refactor
hjwilli Feb 19, 2021
9a7afdf
Dataset Upload UI changes
mgstauffer Jan 12, 2021
20451d2
Finish ordinal ranking UI
mgstauffer Jan 25, 2021
012cd83
Change text-based feature-specification modals to new method and fix
mgstauffer Jan 28, 2021
44d48e1
Add escape-key support for closing modals in File Upload window
mgstauffer Feb 1, 2021
bb50a5a
File Upload - fix esc key behavior w/ error dialog; fix cancel file load
mgstauffer Feb 2, 2021
86a3446
file upload - small UI changes - probably the final ones
mgstauffer Feb 3, 2021
a94fca7
R2 score UI changes
hjwilli Feb 24, 2021
c6897a0
Allow negative R2 scores when determining best
hjwilli Feb 24, 2021
ca995f2
Merge branch 'master' into surprise_pkg
lacava Feb 26, 2021
ced3299
tries without the -e flag
lacava Feb 26, 2021
fe61a5c
updates surprise pkg, trying to force it to use cython
lacava Feb 26, 2021
dae1c18
regression UI update
hjwilli Feb 26, 2021
711d482
Update pennai_tests.yml
hjwilli Feb 26, 2021
90712f6
Merge branch 'master' into regression_ui
hjwilli Mar 5, 2021
56a5c60
Merge pull request #316 from EpistasisLab/regression_ui
hjwilli Mar 5, 2021
57dcee9
updates surprise version in docs
lacava Mar 5, 2021
53d25d8
Bump elliptic from 6.5.3 to 6.5.4 in /lab/webapp
dependabot[bot] Mar 9, 2021
ba4014b
Merge pull request #320 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Mar 11, 2021
24c23ab
use surprise v1.1.1.1
lacava Mar 12, 2021
aa640d1
FileUpload - add auto-selection of target column during init
mgstauffer Mar 15, 2021
6a1683b
FileUpload - fix bug with textual specification of categorical features
mgstauffer Mar 19, 2021
ba74f49
Merge pull request #313 from EpistasisLab/surprise_pkg
lacava Mar 26, 2021
8f8fd23
Bump y18n from 4.0.0 to 4.0.1 in /machine
dependabot[bot] Mar 30, 2021
0fd88f4
Merge pull request #322 from EpistasisLab/dependabot/npm_and_yarn/mac…
hjwilli Apr 2, 2021
632e30a
Bump y18n from 4.0.0 to 4.0.1 in /lab
dependabot[bot] Apr 2, 2021
1ac1a41
Bump y18n from 4.0.0 to 4.0.1 in /lab/webapp
dependabot[bot] Apr 2, 2021
8555928
Merge pull request #323 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Apr 2, 2021
6ebea52
Merge pull request #321 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Apr 2, 2021
4f76b40
Merge pull request #317 from EpistasisLab/DataUploadUiTweaksNew
hjwilli Apr 7, 2021
3041f53
Bump ua-parser-js from 0.7.19 to 0.7.28 in /lab/webapp
dependabot[bot] May 6, 2021
1ce32f7
Merge pull request #324 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli May 7, 2021
c05c2b1
Bump hosted-git-info from 2.7.1 to 2.8.9 in /lab/webapp
dependabot[bot] May 10, 2021
245c6a4
Working on FileUpload unit tests. Several new ones added
mgstauffer Mar 15, 2021
bf67a1f
IN PROGRESS FileUpload more tests.
mgstauffer Mar 15, 2021
b1cc70b
IN PROGRESS FileUpload more tests.
mgstauffer Apr 15, 2021
d93ec5c
File Upload - unit tests complete
mgstauffer Apr 16, 2021
0247d4b
Fix unit test runner and js_tests to exit with appropriate exit codes
mgstauffer May 4, 2021
e8f6d79
File Upload Unit Tests - add enzyme snapshot gen'ed on local machine
mgstauffer May 7, 2021
9cc3ca1
Add local-gen snapshot via yml; unit_test_runner changes in progress
mgstauffer May 18, 2021
c94b686
Revert unit_test_runner.sh changes
mgstauffer May 24, 2021
f103001
Bump browserslist from 4.12.0 to 4.16.6 in /lab
dependabot[bot] May 25, 2021
f2eead1
Unit testing - add env var-based options for managing which run
mgstauffer May 25, 2021
7cb3f17
Bump glob-parent from 5.0.0 to 5.1.2 in /machine
dependabot[bot] Jun 9, 2021
ee2e55a
Merge pull request #331 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jun 11, 2021
a24da22
Bump ws from 3.3.3 to 5.2.3 in /lab
dependabot[bot] Jun 11, 2021
2457c42
Merge pull request #329 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jun 11, 2021
b23556b
Bump hosted-git-info from 2.8.8 to 2.8.9 in /lab
dependabot[bot] Jun 11, 2021
42984c0
Merge pull request #335 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jun 15, 2021
2c30790
Bump ws from 3.3.3 to 5.2.3 in /machine
dependabot[bot] Jun 15, 2021
8a5124f
Merge pull request #330 from EpistasisLab/FileUploadUnitTests2
mgstauffer Jun 16, 2021
13ac76d
Bump lodash from 4.17.19 to 4.17.21 in /lab
dependabot[bot] Jun 16, 2021
c552778
Merge branch 'master' into UnitTestRunnerOptions
mgstauffer Jun 16, 2021
dc44de4
Merge pull request #332 from EpistasisLab/UnitTestRunnerOptions
mgstauffer Jun 16, 2021
537118b
Merge pull request #328 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jun 21, 2021
6e8ea7d
Merge pull request #326 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jun 21, 2021
bb6ff48
Bump lodash from 4.17.19 to 4.17.21 in /lab/webapp
dependabot[bot] Jun 21, 2021
b4d6869
Update developerGuide.md
mgstauffer Jun 23, 2021
2b2dfce
Fixed update of dataset page on sibling site instances.
mgstauffer Jun 15, 2021
1180561
Add dataset prediction type as filter and column on Experiments page
mgstauffer Jun 25, 2021
6b9b4e1
Bump socket.io-parser from 3.3.0 to 3.3.2 in /lab/webapp
dependabot[bot] Jul 1, 2021
fc5f41e
Merge pull request #338 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jul 8, 2021
c9d8afc
Merge pull request #327 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Jul 8, 2021
ca2031e
Bump lodash from 4.17.19 to 4.17.21 in /machine
dependabot[bot] Jul 8, 2021
b485b56
Merge pull request #325 from EpistasisLab/dependabot/npm_and_yarn/mac…
hjwilli Jul 8, 2021
50e76f8
Merge pull request #333 from EpistasisLab/dependabot/npm_and_yarn/mac…
hjwilli Jul 8, 2021
88da114
Merge pull request #334 from EpistasisLab/dependabot/npm_and_yarn/mac…
hjwilli Jul 8, 2021
3e97b41
Fix experiments page prediction filter
mgstauffer Jul 9, 2021
bedf24b
Merge pull request #337 from EpistasisLab/RefreshDatasetsViewOnNewDat…
mgstauffer Jul 9, 2021
e36f4f5
Merge pull request #336 from EpistasisLab/AddExperimentsFilter_Predic…
mgstauffer Jul 9, 2021
1fb87f4
Bump path-parse from 1.0.6 to 1.0.7 in /lab
dependabot[bot] Aug 11, 2021
e3bd765
Merge pull request #340 from EpistasisLab/dependabot/npm_and_yarn/lab…
hjwilli Aug 12, 2021
c741f09
shap package update
hjwilli Sep 8, 2021
b3facea
Merge pull request #343 from EpistasisLab/shap_package_update
hjwilli Sep 9, 2021
d111340
Bump tmpl from 1.0.4 to 1.0.5 in /lab
dependabot[bot] Sep 21, 2021
5872561
Working on experiments page viewMode for showing all algorithms at once
mgstauffer Aug 21, 2021
bce97a2
Experiments view - working now to sort by column separately for each
mgstauffer Aug 31, 2021
9a5c814
Rebase on master; Fix padding around Experiment page simple/expanded …
mgstauffer Sep 3, 2021
d3fdc09
Fix Experiment page simple/expanded view button - make surrounding
mgstauffer Oct 8, 2021
6c110e9
Merge pull request #345 from EpistasisLab/Experiments_AlgoDetailView
mgstauffer Oct 12, 2021
6d76c09
Update README.md
Apr 18, 2022
0e5af67
Merge pull request #356 from moranjay/patch-1
nickotto Apr 18, 2022
a209164
Renamed webapp GUI and readmes
jay-m-dev Apr 19, 2022
01bdc42
fix News line break and test URLs
Apr 20, 2022
3eb53e3
URL test done, rebranded
Apr 20, 2022
060a670
Merge pull request #357 from EpistasisLab/aliro_rebranding
Apr 20, 2022
07262f4
Rebranding Sphinx docs conf.py and index.rst
Apr 21, 2022
b565f01
Merge pull request #358 from EpistasisLab/aliro_rebranding
Apr 21, 2022
75c3f33
Update pennai_tests.yml
Apr 25, 2022
794334d
Update README.md
Apr 25, 2022
ec31f9c
Aliro rebranding comments and docker images
Apr 27, 2022
de21158
Docker images all lower
Apr 27, 2022
f3c41b4
Fixed docs indentation errors
Apr 28, 2022
a3c2fec
Merge pull request #344 from EpistasisLab/dependabot/npm_and_yarn/lab…
May 2, 2022
efeb6a7
nodejs v11.14.0 to v12.22.9
Aug 10, 2022
344f458
pennai -> aliro on github workflows and unit tester
Aug 10, 2022
32ae95d
pennai -> aliro CICD icon
Aug 10, 2022
8944965
Documented Hyper-V requirement on Windows
Aug 15, 2022
0c927fc
Moved Hyper-V documentation to developer guide.
Aug 16, 2022
98a9d7e
Fixed dev guide production release list, new theme
Aug 22, 2022
34c5ddc
Release version 0.18
Aug 23, 2022
509de36
Add new dockerfiles for raspberry pi
JDRomano2 Jan 15, 2021
b478c98
Create new docker compose configuration for rpi
JDRomano2 Jan 15, 2021
6e1e97a
Add rpi dependency wheels as a Git submodule
JDRomano2 Jan 15, 2021
c4abad1
Make Dockerfiles for rpi see wheel files
JDRomano2 Jan 15, 2021
1e761e5
Revert machine Dockerfile_production after accidental change
JDRomano2 Jan 15, 2021
3bb4b00
Builds all docker containers
JDRomano2 Jan 16, 2021
20f7e58
Create mongodb data directory in dbmongo container if it doesn't exist
JDRomano2 Jan 16, 2021
89004fa
Bump machine (rpi) to buster to fix arm64 glibc distribution
JDRomano2 Jan 24, 2021
7a36cd7
Improve naming convention for RPi dockerfiles and create RPi test doc…
JDRomano2 Jan 24, 2021
4c91f74
Make new test docker-compose files point to the right Dockerfiles
JDRomano2 Jan 24, 2021
61b3ed1
Pass all unit tests on Raspberry Pi
JDRomano2 Jan 25, 2021
b2869e5
Added rpi production yml and Dockerfiles
Aug 23, 2022
875588a
updated node version
Aug 23, 2022
5df840f
Fixed node version and keyserver conflicts
Aug 23, 2022
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Bump machine (rpi) to buster to fix arm64 glibc distribution
JDRomano2 authored and Jay Moran committed Aug 23, 2022
commit 89004faf384df468253856b668777d611b5efddd
8 changes: 5 additions & 3 deletions docker/machine/Dockerfile_raspberrypi
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
FROM python:3.7-stretch
FROM python:3.7-buster

ENV NODE_VERSION 12.20.0

@@ -59,12 +59,14 @@ ARG python_wheel_directory=docker/pennai-arm64-deps/machine/wheel
RUN apt-get update --fix-missing && apt-get install -y \
openssh-client openssh-server graphviz \
net-tools iputils-ping xz-utils \
ngrep ca-cacert \
build-essential cmake lsb-core cpio mesa-common-dev \
ngrep \
libatlas-base-dev \
build-essential cmake cpio mesa-common-dev \
libglib2.0-0 libxext6 libsm6 libxrender1 dos2unix \
--no-install-recommends && \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
# Removed: lsb-core ca-cacert glibc

# setup python environment
COPY ${docker_filepath}/requirements-raspberrypi.txt /root/