Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

tabs to spaces and file headers #564

Merged
merged 6 commits into from
Jan 20, 2023
Merged

tabs to spaces and file headers #564

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
845163a
updated source_file_header.txt with proposed update
jay-m-dev Jan 19, 2023
75daabc
updated header files
jay-m-dev Jan 19, 2023
1a3721b
update
HyunjunA Jan 19, 2023
977494c
remove comments in the scatterplot components
HyunjunA Jan 19, 2023
4f78adc
Remove old code files
HyunjunA Jan 19, 2023
16c7b49
Merge branch 'EpistasisLab:master' into pep8_tabs
jay-m-dev Jan 19, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 5 additions & 2 deletions ai/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/ai.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/api_utils.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/knowledgebase_utils.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metalearning/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metalearning/dataset_describe.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metalearning/export_to_mongo.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metalearning/get_metafeatures.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metalearning/make_meta_ml_dataset.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metalearning/tests/test_dataset_describe.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metalearning/tests/test_get_metafeatures.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/metrics.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/q_utils.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/recommender/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/recommender/average_recommender.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/recommender/base.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/recommender/knn_meta_recommender.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/recommender/random_recommender.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/recommender/surprise_recommenders.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/request_manager.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/sklearn/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/sklearn/config/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/sklearn/config/classifiers.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/sklearn/config/regressors.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/sklearn/pennai_sklearn.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
7 changes: 5 additions & 2 deletions ai/tests/lab_api_mocker.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
"""~This file is part of the Aliro library~

Copyright (C) 2023 Epistasis Lab, Cedars-Sinai Medical Center
Copyright (C) 2023 Epistasis Lab,
Center for Artificial Intelligence Research and Education (CAIRE),
Department of Computational Biomedicine (CBM),
Cedars-Sinai Medical Center.

Aliro is maintained by:
- Jun Choi (hyunjun.choi@cshs.org)
- Hyunjun Choi (hyunjun.choi@cshs.org)
- Miguel Hernandez (miguel.e.hernandez@cshs.org)
- Nick Matsumoto (nicholas.matsumoto@cshs.org)
- Jay Moran (jay.moran@cshs.org)
Expand Down
Loading