eveGNN contains functions and scripts to apply Neural Network approaches on phylogenetic trees, for tree-level parameter estimation.
- Optuna >= 3.4.0
- R >= 4.2.1
- Python >= 3.8.16
- PyTorch Geometric >= 2.4.0
- eveGNN (in R, run
devtools::install_github("EvoLandEco/eveGNN"))
ADAM (Automated DAta Manager) is a simple shell program to help manage simulation data, train GNN model and more. The program and the scripts it calls are designed for a cluster computer in the SLURM environment.
- First, clone the repo:
git clone https://github.com/EvoLandEco/eveGNN- Second, locate to bash, create a folder for new project:
cd Bash
mkdir myproject- Finally, run ADAM:
bash ADAM.sh myproject